Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq567 168 6e-37 >seq567 Length=338301 Score = 168 bits (186), Expect = 6e-37 Identities = 183/241 (76%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||||||||| | |||||||| | ||||||||| || || | | Sbjct 137227 AAAATTTGCATACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATG 137286 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||||||||| ||||| || |||||||| ||||| ||| |||| || | ||| | Sbjct 137287 TTATAATCGCT--AAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCT 137344 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| |||||||| ||||| ||||| | ||||| | ||| || | |||||| | Sbjct 137345 GTTGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAAT 137404 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | | || || |||| ||||| ||||| |||||||| ||||| |||||||| |||| Sbjct 137405 CATTGGGCTCAACATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCA 137464 Query 95007 T 95007 | Sbjct 137465 T 137465 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||||||||| | |||||||| | ||||||||| || || | Sbjct 137911 AAAATTTGCATCCCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATA 137970 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| ||| | | |||| |||||| || || ||||| | || || | ||| || Sbjct 137971 TTATAGTCGTTAAGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGT 138030 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||||||||| ||||| | ||| || | ||||||| |||| | || Sbjct 138031 TGGTCTGGCGGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCG 138090 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || ||||| ||||| | || |||||||| |||||||| Sbjct 138091 TCAGGCTCTACATCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || ||||| | | |||||||| | ||| |||||||| || | || | Sbjct 137459 TTTGCATACCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGT 137518 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||||| | |||| |||||| ||||||||||| | || || | ||| || |||| Sbjct 137519 AATCGCTTAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGAT 137578 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||| ||||| | ||| || | || || | | |||| ||| | Sbjct 137579 CTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGG 137638 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || | |||||||| || |||||||| Sbjct 137639 GCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || ||||| | | || ||||| | |||||||||||| || | Sbjct 136293 AAAAATTTGCATACCACCCCTCAACCTAAGAACTAAGTGGAGAGTAGATTCCTTCTGGAT 136352 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||| || |||| |||| | || || ||||| || ||| |||| || | ||| || Sbjct 136353 ATTATAGTCACTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTG 136412 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| || ||||| ||||| || || | ||| || | ||| || | | |||| ||| Sbjct 136413 TTGATCAGGGGGAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTCTCAACAGAGTC 136472 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || || || || || | |||||||| || |||||||| Sbjct 136473 GTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 136532 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 |||||||| || || | ||||||||||| || || || |||||||| || || | Sbjct 136108 GTAGATTCTTTCTGGATATTATAATCGCT--AAGCGTACGACCATCCTCCAATTGCTTCC 136165 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| || | ||| || ||||| |||||||| ||||| ||||| | || || | || Sbjct 136166 CTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGACT 136225 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | || | | |||| ||| | ||| || || || | ||||| |||||||| || || Sbjct 136226 TCACAGTCTCAACAGAGTC-GTTTGGCTCCACATCCAGAGTGATCGTTTTTCCGGTGAGT 136284 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||| Sbjct 136285 GTTTTGACAAAAATTTGCAT 136304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258939844520