Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3622 192 6e-44 >seq3622 Length=296610 Score = 192 bits (212), Expect = 6e-44 Identities = 362/523 (69%), Gaps = 32/523 (6%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| || | ||| | |||||| |||||||||||| ||| | ||| | Sbjct 278698 TTAAAACTCTGAATCCAGCCTGAAAACGCGATCTTCTTTTTTGCTCATGACTCCGGACCT 278639 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGATT 21245 |||||| || | || | ||||||||||||||||| |||||||||| ||| || |||| Sbjct 278638 TTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT- 278580 Query 21246 CCATAAAATCAAATGGATTTTCAG-ATT------------TAAA--------TATTTTAT 21284 |||| ||||| ||||||||||||| ||| |||| || ||||| Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 21285 TACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACAT-TAAT 21343 |||| || | | | | | ||| || ||||| || ||||||| ||||| | | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATATTTGCACATCTCAA 278460 Query 21344 TCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATA 21403 | || ||||| |||||||| | ||||| || |||| |||||||| |||||| || Sbjct 278459 TGGCA-TTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATT 278401 Query 21404 GAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAA---TAAT 21460 || || || ||||| || || | | || ||| | | | || | || ||| Sbjct 278400 TCAACTGCATCCACAATAATTCTT-TGAACC-AGAGATTGT-GATGGTTTCACGGTTAAA 278344 Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 || |||||||||| ||||| |||||| ||| | || |||||||| || || | |||| Sbjct 278343 TGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAGTTCA 278284 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 ||| || | || || |||||||| || | ||||||||||||||| || | |||||| Sbjct 278283 TTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGCAAAT 278224 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTA 21623 | || ||||||||||| || || || | |||||| ||||||| Sbjct 278223 GAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTA 278182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531862523088680