Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4076 233 2e-56 seq3622 187 3e-42 >seq4076 Length=468004 Score = 233 bits (258), Expect = 2e-56 Identities = 947/1486 (64%), Gaps = 31/1486 (2%) Strand=Plus/Minus Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || |||||||| ||||| || ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 62451 AATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62509 |||| ||| || | |||| || ||| || || || || || | ||||||| ||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 62510 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 62569 | ||| || ||| || ||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT-AGTTCACAACTCGCCTCTAATG 62628 ||| |||| || || || || || | ||| | ||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTTG-GCTCAATTCGCATGAAGACTCAAGGG 421986 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 || | | ||| || || || || || || ||||| || || || |||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 | |||||| | | | | |||| || || || ||||||||||| || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 |||| | ||||||| || ||||||| |||| ||| ||| | ||| || | || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 62809 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----- 62863 | || | ||| ||| | ||| | || | ||||| |||| || Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 62864 ---TCGCCCATCTATTACA---AACATGTTCAAG----GCAACAGATGCCAGATTACAAA 62913 | | || | ||| || || || | | | || || || ||| || | Sbjct 421745 GATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973 | || ||||| | ||| |||| | ||||| ||||| |||||||| | |||| Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033 | ||| | || | ||| ||||| || ||||| || ||||| || || | ||| |||| Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63093 | ||| ||||| || || | || | || | ||| | | | || |||| | Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 63094 TAGATTTGTATCTCCTTTCTCT--TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 63151 | | | || | |||||| |||||| | |||| | | ||||| || ||||| Sbjct 421505 TCTGTACGAATTT--TTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTCC 421448 Query 63152 CCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63208 || |||| || || |||||| ||| |||||||||| |||| || ||||| Sbjct 421447 GTAAC---TGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTC 421391 Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 |||| |||| |||||| || | ||| || ||||||||||| | ||||| ||| |||| Sbjct 421390 TTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGC 421331 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 ||| ||||||| ||| |||||||| | || || ||||| | | |||||||| || Sbjct 421330 CCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTG 421271 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||| ||||| | || || || | | ||| |||| ||||| || || ||||| | ||| Sbjct 421270 CCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTA 421211 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 | | | ||| || | || || | |||||| | | |||||| || | || || Sbjct 421210 ACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGT 421151 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 || | ||| | ||| ||| ||||| || | || || ||||| || || Sbjct 421150 TCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAGC 421091 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 ||||| || |||||| | || ||||| | ||||||| ||||| ||||| Sbjct 421090 ATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATC 421031 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 ||||| || | || || |||| || ||| || | | || ||||| || || Sbjct 421030 TTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACAA 420971 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 || || | |||||| || | | |||||| | || | ||| || | |||| Sbjct 420970 TGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTTG 420911 Query 63689 GTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 || ||||| || | || ||| | |||||||| | ||| | ||| || || ||||| | Sbjct 420910 TTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTCT 420852 Query 63748 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 | || | || ||| | ||| | ||| |||||| ||||| || Sbjct 420851 CGACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 63970 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64029 |||||||||| ||||||||||| || | |||| ||| || | ||||||||||| |||| Sbjct 420561 TTGTTTCCTTATGTAGATTTGAAACTTCGATTCGGGCAGCCAATATGGCATAATCGGGAT 420502 Query 64030 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64089 ||| || || | ||||| |||| || ||||| || |||||||| ||||| || | Sbjct 420501 GTTTAGTTGTCATACACGCTGCCGTTTCCGCAGCCAGCGTATCCAATTCGACCGTAGTAA 420442 Query 64090 CTCC 64093 |||| Sbjct 420441 CTCC 420438 >seq3622 Length=296610 Score = 187 bits (206), Expect = 3e-42 Identities = 630/986 (64%), Gaps = 110/986 (11%) Strand=Plus/Minus Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 |||| ||||| || || || |||||||||||||| ||||||||||||| ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA------TTCA- 33126 |||||||||| || ||||| | |||| | || | | || || || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 33127 -GAAATCAAT-------------CTATCCGCGACGAATTCTATATATGTTTTCATCATTT 33172 |||| ||| | ||| ||||| || || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 33173 CACA---ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAA 33229 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 33230 TGGATACCGCATCTGTTATAATAGATCTAACG---GTTTCTTCACTCGGTGGATGCAA-- 33284 | || ||||| ||||| | ||| | || | | ||| | || Sbjct 278402 TTTCAACTGCATCCACAATAATTCTTTGAACCAGAGATTGT------GATGGTTTCACGG 278349 Query 33285 -TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 33343 |||||| |||||||||| ||||||||||| || || ||||| || || || || | Sbjct 278348 TTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGA 278289 Query 33344 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 |||| || || | | || ||||||| ||||||||||| | |||||| |||| || Sbjct 278288 GTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAG 278229 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA--------------T 33449 | ||||| ||||||||||| |||||||| || | ||||||||||| | Sbjct 278228 CAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGT 278170 Query 33450 AA-GTCTCTCT---------CCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 33499 || || || | ||| | || | || ||||| || ||||||||| Sbjct 278169 AAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAAT 278110 Query 33500 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 33559 ||||| || ||||| || | |||||| | ||| ||||| | | ||||| Sbjct 278109 TAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTTCAT 278050 Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619 |||||||||| || || |||||||||||||| ||||| |||||||||| |||||||| Sbjct 278049 CTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAA 277990 Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679 |||| ||| |||||||||||| | | || || | | || | ||| ||||| | Sbjct 277989 CAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAAAAC 277931 Query 33680 G-TTCCGCC------------------------AAATTTTCATTCACTATTCCGTCACTG 33714 | ||| ||| | |||||| |||||||| || ||||| Sbjct 277930 GTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTC 277871 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTTA-- 33771 || |||||||| || | || | || |||| | || | | | | ||| | | Sbjct 277870 GCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAAC 277811 Query 33772 --------TT---------CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814 || |||||||| || || ||||||| ||| || ||||| || | Sbjct 277810 GAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAG 277751 Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 ||||||| || ||| | |||||||| || | | ||| || |||| || | ||| || | Sbjct 277750 TCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAA 277691 Query 33875 AAATAACAAATCTATTTGGATTTGGT 33900 | ||||| || | ||| ||||| ||| Sbjct 277690 AGATAACGAAACGATTAGGATTGGGT 277665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902371162120