Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2506 109 4e-19 seq5161 104 2e-17 seq567 89.7 3e-13 >seq2506 Length=20947 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||| |||||||||| |||| ||||| || |||||||| Sbjct 18695 AAGCCCGTTCCCTTGACTGTTTGTTCGCTAGATGGTAGGTAGGGACAGTGGGAATCTCGT 18636 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 18635 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 18601 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12243 CTCTCTTCTCAGAATTCTTTTCACCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGG 12184 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||||| Sbjct 12183 AGTAATATTTAGCCTTA 12167 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14816 CTCTCTTCTCAGAATTCTTTTCACCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGG 14757 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||||| Sbjct 14756 AGTAATATTTAGCCTTA 14740 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 16430 CTCTCTTCTCAGAATTCTTTTCACCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGG 16371 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||||| Sbjct 16370 AGTAATATTTAGCCTTA 16354 >seq5161 Length=2011 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1585 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1526 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1525 GCCAATATTTAGCTTTA 1509 >seq567 Length=338301 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| ||||| | | || || || ||||| ||||| || ||||| || ||| Sbjct 136304 TACCACCCCTCAACCTAAGAACTAAGTGGAGAGTAGATTCCTTCTGGATATTATAGTCAC 136363 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || |||| || | || || |||||||| || || | |||||||| | || Sbjct 136364 TCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTGTTGATCAGGGG 136423 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || ||| || ||||||| ||| |||| || || | Sbjct 136424 GAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTCTCAACAGAGTCGTTGGGCTCCA 136483 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| || |||||||||||||| |||||||| Sbjct 136484 CATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 136532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| ||||| | | ||||| || |||||| ||||| || ||||||||||| Sbjct 137465 TACCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGC 137524 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | |||||||| || || || || | |||||||| | || Sbjct 137525 TTAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGG 137584 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| || || || ||| |||| || || | Sbjct 137585 GAATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCA 137644 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| || |||||||||||||| |||||||| Sbjct 137645 CATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923698953067