Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4076 226 4e-54 seq3622 178 2e-39 >seq4076 Length=468004 Score = 226 bits (250), Expect = 4e-54 Identities = 944/1484 (64%), Gaps = 27/1484 (2%) Strand=Plus/Minus Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || |||||||| ||||| || ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 62306 AATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 |||| ||| || | |||| || ||| || || || || || | ||||||| ||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 62365 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 62424 | ||| || ||| || ||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT-AGTTCACAACTCGCCTCTAATG 62483 ||| |||| || || || || || | ||| | ||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTTG-GCTCAATTCGCATGAAGACTCAAGGG 421986 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 || | | ||| || || || || || || ||||| || || || |||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 | |||||| | | | | |||| || || || ||||||||||| || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 |||| | ||||||| || ||||||| |||| ||| ||| | ||| || | || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 62664 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----- 62718 | || | ||| ||| | ||| | || | ||||| |||| || Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 62719 ---TCGCCCATCTATTACA---AACATGTTCA--ATGCAACA--GATGCCAGATTACAAA 62768 | | || | ||| || || || | | || | | || || ||| || | Sbjct 421745 GATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 62769 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62828 | || ||||| | ||| |||| | ||||| ||||| |||||||| | |||| Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 62829 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 62888 || ||| | || | ||| ||||| || ||||| || ||||| || || | ||| |||| Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 62889 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 62948 | ||| ||||| || || | || | || | ||| | | | || |||| | Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 62949 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008 | | | || | || || |||||| | |||| | | ||||| || ||||| Sbjct 421505 TCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTCCGT 421446 Query 63009 AAACATTGTCC---AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63065 || |||| || || |||||| ||| |||||||||| |||| || ||||| | Sbjct 421445 AAC---TGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTCTT 421389 Query 63066 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63125 ||| |||| |||||| || | ||| || ||||||||||| | ||||| ||| |||| | Sbjct 421388 CCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGCCC 421329 Query 63126 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185 || ||||||| ||| |||||||| | || || ||||| | | |||||||| |||| Sbjct 421328 TAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTGCC 421269 Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63245 | ||||| | || || || | | ||| |||| ||||| || || ||||| | ||| | Sbjct 421268 AGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTAAC 421209 Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 63305 | | ||| || | || || | |||||| | | ||| || || || || || | Sbjct 421208 GGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGTTC 421149 Query 63306 CTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63365 | | ||| | ||| ||| ||||| || | || || ||||| || || Sbjct 421148 CAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAGCAT 421089 Query 63366 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 63425 ||||| || |||||| | || || || | || |||| || || ||||| Sbjct 421088 ACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATCTT 421029 Query 63426 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 63485 ||||| || | || || |||| || ||| || | | || ||||| || || | Sbjct 421028 TCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACAATG 420969 Query 63486 TAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63545 | || | |||||| || | | |||||| | || | ||| || | |||| | Sbjct 420968 TCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTTGTT 420909 Query 63546 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 | ||||| || | || ||| | |||||||| | ||| | ||| || || ||||| || Sbjct 420908 CAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTCTCG 420850 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 || | || ||| | ||| | ||| |||||| ||||| || Sbjct 420849 ACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 >seq3622 Length=296610 Score = 178 bits (196), Expect = 2e-39 Identities = 627/985 (64%), Gaps = 116/985 (12%) Strand=Plus/Minus Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 |||| ||||| || || || |||||||||||||| ||||| ||||| | ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA------TTCA- 32483 ||||||||||||||||||| | |||| | || | | || || || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 32484 -GAAATCAAT-------------CTATCTGCGACAAATTCTATATATGTTTTCATCATTT 32529 |||| ||| | ||| |||||||| || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 32530 CACA---ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 32586 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 32587 TAGAGACCGCGTCTGTTATAATAGATCTT------ACTGTTTCTTCACTCGGTGGATACA 32640 | || || || ||||| |||| | | || | | ||| | || Sbjct 278402 TTTCAACTGCATCCACAATAAT---TCTTTGAACCAGAGATTGT------GATGGTTTCA 278352 Query 32641 A---TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 32697 |||||| |||||||||| ||||||||||| || || ||||| || || || | Sbjct 278351 CGGTTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGA 278292 Query 32698 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 | | ||| || || | | || ||||||| ||||||||||| | |||||| |||| Sbjct 278291 TGAGTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGG 278232 Query 32758 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA------------ 32805 |||||||| |||||||||||||||||||| || | |||||||||| Sbjct 278231 CAGCAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACAT 278173 Query 32806 --TAA-GTCTCTCT---------CCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 32853 ||| || || | ||| | || | || ||||| || |||||| Sbjct 278172 TGTAAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCC 278113 Query 32854 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 32913 ||| ||||| || ||||| || | || || | |||| ||||| | | || Sbjct 278112 AATTAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTT 278053 Query 32914 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 32973 ||| |||||||||| ||||| || ||||||||||| ||||| |||||||||| ||||| Sbjct 278052 CATCTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTT 277993 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33033 ||| |||| || ||||||||||| | | || || | | || | ||| |||| Sbjct 277992 CAACAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAA 277934 Query 33034 ATCGTT-----CTG--------------------CTAAATTTTCATTCACTATTCCGTCA 33068 | |||| ||| ||| |||||| |||||||| || ||| Sbjct 277933 AACGTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCA 277874 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTT 33127 || || |||||||| || | || | || |||| | || | | | | ||| | Sbjct 277873 CTCGCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATA 277814 Query 33128 A----------TT---------CCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 33168 | || |||||||| || || ||||||| |||||| ||||| | Sbjct 277813 AACGAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGA 277754 Query 33169 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTG 33228 | |||||||| || ||| | |||||||| || | | ||| || ||||| || | || | Sbjct 277753 CAGTCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAG 277694 Query 33229 GAAAAATAACAAATCTATTTGGATT 33253 |||| ||||| || | ||| ||||| Sbjct 277693 GAAAGATAACGAAACGATTAGGATT 277669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586402257200