Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3622 105 7e-18 seq3821 93.3 5e-14 >seq3622 Length=296610 Score = 105 bits (116), Expect = 7e-18 Identities = 554/870 (64%), Gaps = 86/870 (10%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCA-AATCACAATTCATTCCTAGAAGACGTA 92984 |||||| ||||| || || || | ||||| ||| || |||||||| | | || | Sbjct 278494 ATCAGCGACAAACTCAATATATTTGCACATCTCAATGGCA-TTCATTCCGATCAAACTCA 278436 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||||||| || || ||||| || ||||| |||||| |||| || || ||| | |||| Sbjct 278435 CAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATTTCAACTGCATCCA-CAATAATTCTT 278377 Query 93045 TTACTCTACTATT-TGGTGGTTTTTGTACG---ACATAATTGTACATTAAGCACGCAAAG 93100 | | | ||| || |||||| ||| | || | | |||| ||||| || || Sbjct 278376 TGAACCAGAGATTGTGATGGTTTC---ACGGTTAAATGACTAAACATCAAGCATGCGAAA 278320 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 || ||||| | || || || | || | || | ||||| ||||| | || || || | Sbjct 278319 TCAGTATGAAGTCCCTCATCCC-TGCTGATGAGTTCATTACTGAAGGCCAAGCCAGGCAT 278261 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 | || || || || | |||||| || | |||||| ||||||||| || || ||||| Sbjct 278260 TAAACCACGCTTTTTTAACCAAAAAATGGCAGCAAATGAACCAGAAAAGAAAATTCCTTC 278201 Query 93220 CACGGCTGCAAATGCCACAATAC-------GTTCGG---CAAAATTTGCGGAAT------ 93263 || | ||||| || || | | || || | | ||| | ||| Sbjct 278200 GACAGA-GCAAAGGCAACTACCCTCACATTGTAAGGTGCCTATATTAGGATAATATATAC 278142 Query 93264 --TACT--GCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 |||| | | ||||||||| | |||||||| || ||||| || ||| |||| || Sbjct 278141 TCTACTTTGATCGATCCATTTGAGAGCCCAATTAGCCTTTTTAGCAACACATGGTAACGT 278082 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| | ||| ||| | | || || || |||| | |||||| ||||| || Sbjct 278081 TTCAACAGCACGAAAGAACTTCATACGTTCATCTATATCTTTAACGTATGTGTCGATCAA 278022 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| ||||| || ||||| || || || | || | ||||||||||||||| | | Sbjct 278021 AAGACTGTACATCTCCGAATGAACGTTTTCAACAGCCACCTGGAATCCGTAGAAAAAACG 277962 Query 93439 AGCTTCCG-----TGA---TCT-GCAC------TTCT---TGA---------GAAAATCT 93471 ||||| | ||| ||| ||| ||| ||| ||| |||| Sbjct 277961 TGCTTCAGGTGTTTGAGCCTCTCGCAAAAACGTTTCAGCCTGAATAATAAGGGAAGATCT 277902 Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531 ||| |||||||| || ||||| ||||| || ||||||||||| | | | Sbjct 277901 ---TACTAGATTTTCGTTCACTATCCCATCACTCGCAGCAAAAAAAGCGAGCACGTAAGA 277845 Query 93532 TATAAAATGT--TTCTCATCATCTTT-------------AAGCTT---AT---CCCAATC 93570 || ||||| ||| | | |||| || ||| || ||||||| Sbjct 277844 AATGAAATGACGTTCCCC-CGGCTTTTAAATAAACGAAAAACCTTCAAATTCGCCCAATC 277786 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 || || || || | ||| || |||||||||||||||||||| || | || ||||| Sbjct 277785 ATCGAGGTCCTTAGATAAATCCACCTCTTCGACAGTCCAAAACGAAGCCACCGCCTTTTT 277726 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 ||| | ||||| || || || || | || ||||| || || ||||||||||| || Sbjct 277725 GTAGAATTCCCAAATATCATGGTAGTTGATAGGAAAGATAACGAAACGATTAGGATTGGG 277666 Query 93691 TTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || || | || || ||| ||||||||| Sbjct 277665 TTGGAGAACAGGTTCGAGTGCTGGGTCAAA 277636 >seq3821 Length=55972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCGTGG 126326 |||| ||||||||||||||||||||||||| |||||||||||| | | || | |||||| Sbjct 28569 CAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGTCCTCAACGAGGGCGTGG 28510 Query 126327 GTTCGAACCCCACACCTGACA 126347 |||| |||||||| |||| || Sbjct 28509 GTTCAAACCCCACTCCTGGCA 28489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820726904680