Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4076 138 1e-27 seq567 136 3e-27 >seq4076 Length=468004 Score = 138 bits (152), Expect = 1e-27 Identities = 444/680 (65%), Gaps = 17/680 (3%) Strand=Plus/Minus Query 129705 CAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATT 129764 ||||||||| || ||| |||| || || ||||| |||||||| |||| ||| | ||| Sbjct 421696 CAAATTGCACACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATT 421637 Query 129765 ACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTA 129824 ||| ||| ||| || | | |||||| ||||||||| ||||||| ||||||||||| Sbjct 421636 ACTTGATTTGATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTA 421577 Query 129825 CATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCG 129884 | || | || || ||||||| ||| | || || || | ||| | | | Sbjct 421576 GACAATAAATGGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTG 421517 Query 129885 AGCCTTGATCTGTCT-TACAAATTTGC-CACATTTCTCGTATGCCACATACAGTTGTTCA 129942 || || | || ||| ||| ||||| | || | ||||| || ||| || || Sbjct 421516 GGCTTTTA-CTTTCTGTACGAATTTTTTCTCAGAT-TCGTAGCGCATATAGAGCCTCTCG 421459 Query 129943 AATTCTGAGCCGTGTACGGTGTCG-AGCAACGGCGATTCACGCGGACACATCAAACTCCA 130001 |||||| |||| || || | || || || || | |||||||||| || ||| Sbjct 421458 AATTCTTCTCCGTA-ACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCA 421400 Query 130002 CATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAA 130061 || || | || |||| |||||| |||||||| || | ||| || ||| || || Sbjct 421399 GTCCCCGTCTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAA 421340 Query 130062 ATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAAT 130121 ||| | || | |||||||| ||| | || | ||||||||||| ||| |||| Sbjct 421339 ATCCCTGGCCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAAT 421280 Query 130122 GTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC---CTTCCGTTTGCCCCCTTG 130178 || |||||||| ||||||| |||||| || | | || | || || || ||||| Sbjct 421279 ATCAGCGTGCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTG 421220 Query 130179 GTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGT 130238 || |||| || || |||||| | || | | ||||| | | ||||| | || Sbjct 421219 ATCGACGTAACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGT 421160 Query 130239 GC----CGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGAC 130294 || |||| ||| | |||||| ||| || |||| ||| || || || | Sbjct 421159 GCCGCACGTTCCAGCTATAAATGAA----CCAGAGGCTCGAATGTTGTGCACATGTAACC 421104 Query 130295 CTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAA 130354 | || || || || | || || || |||||| |||| | || || |||| || Sbjct 421103 CGATTCCACCAGCATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCT 421044 Query 130355 CGATACTGTCTTCTTTAATG 130374 ||| ||||| ||||| ||| Sbjct 421043 TGATGCTGTCATCTTTCATG 421024 Score = 127 bits (140), Expect = 2e-24 Identities = 226/330 (68%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 128907 AAAAATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAAT 128966 ||||| ||| | |||||||||||||| ||| | || ||||||| ||| | | || Sbjct 422503 AAAAAGATTGAGAGATTGACTTTGATCTATATATGGAGCGCGATCAGCACTTTGATCGAT 422444 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | | |||| | ||||| |||||||| | ||||| | | |||||| || Sbjct 422443 AATGGTCTTCATCGATAACTCCCAGCTAGTTTTGTATAATTCTCTTATATCTTTTGGGAT 422384 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 |||| ||||| || || ||| |||| ||| ||| || | ||||||| |||||| Sbjct 422383 AGCTTCTATGTTTTGAACTGAGCCCCTGTTCTCAAGAATCTTTTGCCGCATCTCTTCGTT 422324 Query 129087 GTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACC 129146 |||| || |||||||||||||| | | | |||| |||| | ||||| || ||||| Sbjct 422323 CCACAAGTTAAGTTTGATCAAATCATTCATGAGGTATCTGTTCACCACTTGGAATTCACC 422264 Query 129147 CGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCC 129206 | | || || ||| || || ||| |||| || || || || |||||||| || Sbjct 422263 TGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGTTCTGTGGACTCATTGTTTCC 422204 Query 129207 TAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 |||||||||| || | || |||||||| Sbjct 422203 AAATATTTGAGATGTGGATGCAGTGGGCAT 422174 >seq567 Length=338301 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || || |||||| |||| ||||| || || ||| Sbjct 137465 ATGCAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAAT 137406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | || || | | || ||||| ||||||||||| || ||||| || |||||| Sbjct 137405 GATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAA 137346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| ||||| || |||||| ||||| | |||||| ||| Sbjct 137345 CAGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCGCACACTTAGCGATTATAAC 137286 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || | || || ||| | |||||| | || ||| Sbjct 137285 ATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGGT 137238 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | ||||| |||||| ||||||| || ||||| | | | Sbjct 136304 ATGCAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAAC 136245 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | || || | | || || || ||||||||||| || ||||| ||||||||| Sbjct 136244 GACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAA 136185 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || || |||||| || || | |||||| || Sbjct 136184 CAGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGCGATTATAAT 136125 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || || |||||||| || | ||||||||||| Sbjct 136124 ATCCAGAAAGAATCTACACTTCATTTAGTTTT 136093 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| ||||||||||| || | ||||| || ||||| ||| | Sbjct 137693 ATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAAC 137634 Query 22279 GATACCGTGGA--CGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | || || || || ||| || |||||||||||||| || ||||| || |||| Sbjct 137633 GACTCTGTTGAGACGGTA--AAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATC 137576 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| | || || || || || |||||| | |||||| ||||| | |||||||| Sbjct 137575 AACAGAGACTGATTTTCGCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACA 137516 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || |||||||| | || || ||| | | ||| | || ||| Sbjct 137515 ATATCCAGAAGGAATCCACTCTCCACTTGGTTCTTAGGTTGAGGGGTGGT 137466 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| ||||||||||| || | ||||| || ||||| ||| | Sbjct 136532 ATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAAC 136473 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | || || | | || || |||||||| ||||| || ||||| || |||||| Sbjct 136472 GACTCTGTTGAGACTGTGAAGTCTAAGATTCAAGATAAGGAAGGAATTCCCCCTGATCAA 136413 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || || |||||| | || || || Sbjct 136412 CAGAGACTGATTTTTGCCGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGTGACTATAAT 136353 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || |||||| | | ||| | || ||| Sbjct 136352 ATCCAGAAGGAATCTACTCTCCACTTAGTTCTTAGGTTGAGGGGTGGT 136305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || ||||| | || |||||||| ||||||| || || || ||| Sbjct 137922 GATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAA 137863 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | || || | |||| || || || |||||||| || ||||| || ||||| Sbjct 137862 TGACTCTGTTGAGACTGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 137803 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || || | || ||| |||||| | || || || Sbjct 137802 GCAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAA 137743 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||| || |||||||| ||| | || || ||| Sbjct 137742 CATCCAGAAAGAATCTACCCTCCACTTGGTT 137712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| ||||||||||| || | ||||| || ||||| ||| | Sbjct 137009 ATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAAC 136950 Query 22279 GATACCGTGGA--CGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | || || || || ||| || |||||||||||||| || ||||| || |||| Sbjct 136949 GACTCTGTTGAGACGGTA--AAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATC 136892 Query 22337 AACAACGTCTTATATTTGCCGGCAAACA 22364 |||| | || || || || || ||||| Sbjct 136891 AACAGAGACTGATTTTCGCAGGAAAACA 136864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || |||||||| ||||||| || || || ||| Sbjct 137237 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | || || | | || || || || |||||||| || ||||| || ||||| Sbjct 137177 GACTCTGTTGAGACTGTTAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137118 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || || | || ||| |||||| | || || ||| Sbjct 137117 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137058 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || |||||||| ||| | || || ||| Sbjct 137057 ATCCAGAAAGAATCTACCCTCCACTTGGTT 137028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || ||||| | ||||| || || || | | Sbjct 138149 ATGCAGATATTTGTGAAGACGTTGACTGGCAAAACTATAACTCTCGATGTAGAGCCTGAC 138090 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | || || ||||| || |||||||||||||| |||||||| || || ||| Sbjct 138089 GATTCGGTCGAGACCGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCAA 138030 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || || | |||||| ||||| | ||| || || Sbjct 138029 CAGAGACTCATTTTCGCAGGAAAGCAACTTGAGGATGGTCGCACTCTTAACGACTATAAT 137970 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || | || || ||| | |||||| | || || Sbjct 137969 ATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGG 137923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698550440705