Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq567 149 1e-30 seq3124 86.0 1e-11 seq2990 86.0 1e-11 seq149 86.0 1e-11 seq3075 84.2 4e-11 >seq567 Length=338301 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTA 136137 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || |||||||| || || || ||||| ||||| ||||| ||| Sbjct 136138 AGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGA 136197 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| | ||| || | ||| | | ||| || || || Sbjct 136198 ATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACA 136257 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| |||||||| ||||| || ||||| || || ||||| Sbjct 136258 TCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||| ||||| ||||| ||| || || | ||||| || Sbjct 137941 ACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTAAGAGTGCGACCATCCTCA 138000 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| |||||||| |||||||| || ||||| ||||||||||||||| Sbjct 138001 AGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGAATACCTTCCTTGTCTTGA 138060 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| ||||| | || | | ||||| || | || || ||||| Sbjct 138061 ATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTACATCGAGAGTTATAGTTTTG 138120 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| || ||||||||||| Sbjct 138121 CCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||| ||||||||||||||| ||||| | ||||| || Sbjct 137257 ACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTAAGTGTGCGACCATCCTCC 137316 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || |||||||| || || ||||| ||||| || || ||||| |||||||||||||| Sbjct 137317 AATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGG 137376 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | ||| || | ||||| | || | || || || | |||||| ||||| Sbjct 137377 ATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGATCGTTTTG 137436 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || || || ||||| Sbjct 137437 CCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||| ||||||||||| || || || | |||||||| Sbjct 137713 ACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCA 137772 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| ||||| || || ||||| || || || || ||||| ||||||||||| || Sbjct 137773 AGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGG 137832 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | |||||| | ||| | | ||| | || || || | ||||| ||||| Sbjct 137833 ATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTA 137892 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || |||||||| || ||||| Sbjct 137893 CCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||| ||||||||||| || || || | |||||||| Sbjct 137029 ACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCA 137088 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| ||||| || || ||||| || || || || ||||| ||||||||||| || Sbjct 137089 AGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGG 137148 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||| || | ||| | | ||| | || || || | ||||| ||||| Sbjct 137149 ATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTA 137208 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || |||||||| || ||||| Sbjct 137209 CCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || ||||| || |||||| | || | ||||| || Sbjct 137485 ACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCATCCTCA 137544 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || ||||| || ||||| ||||| || || ||||| ||||||||||||||| Sbjct 137545 AGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGA 137604 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | || || | ||| | | ||| | || || |||| || || || || Sbjct 137605 ATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTA 137664 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||| || ||||| ||||||||| Sbjct 137665 CCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 113 bits (124), Expect = 8e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || || || || || ||||| ||||| || || || | || ||||| Sbjct 136324 ACTAAGTGGAGAGTAGATTCCTTCTGGATATTATAGTCACTCAGAGTGCGGCCGTCTTCA 136383 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || ||||| ||||| || || ||||| |||||||| |||||| Sbjct 136384 AGCTGCTTACCGGCAAAAATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 136443 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||| || | ||| | | ||| | || || |||| || || || || Sbjct 136444 ATCTTAGACTTCACAGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTA 136503 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||| || ||||| ||||||||| Sbjct 136504 CCGGTTAAGGTTTTCACGAAAATCTGCATT 136533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || ||||| || ||||| ||||| || || ||||| |||||||||||||||||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || | || || | ||| | | ||| | || || |||| || || || || || Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || ||||| ||||||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCATT 137010 >seq3124 Length=340115 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| |||| ||||||| |||| ||||| ||||||||| Sbjct 247767 GCCCGGCTAGCTCAGTCGGTAGAGCACAAGACTCTTAATCTTGGGGTCGCGGGTTCGAGA 247826 Query 84516 CCCACATCGGGC 84527 ||| | |||||| Sbjct 247827 CCCGCGTCGGGC 247838 >seq2990 Length=597859 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| |||| ||||||| |||| ||||| ||||||||| Sbjct 500562 GCCCGGCTAGCTCAGTCGGTAGAGCACAAGACTCTTAATCTTGGGGTCGCGGGTTCGAGA 500621 Query 84516 CCCACATCGGGC 84527 ||| | |||||| Sbjct 500622 CCCGCGTCGGGC 500633 >seq149 Length=77282 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 1980 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGA 1921 Query 84516 CCCACATCGGGC 84527 ||||| |||||| Sbjct 1920 CCCACGTCGGGC 1909 >seq3075 Length=30624 Score = 84.2 bits (92), Expect = 4e-11 Identities = 177/259 (68%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 186054 AGTTTGCGAGCAGCTGCTTCGTGTCCTTGGGGAAGCAGTAGCCGCCGTAGCCGAAGCTCG 186113 ||||||| ||||||||||| || || || || | |||||| ||||||||||| ||| | Sbjct 5888 AGTTTGCCAGCAGCTGCTTGGTATCTTTCGGCAGGCAGTACCCGCCGTAGCCAAAGGAGG 5947 Query 186114 GGTTGCAATAGCCTCCGCCAATACGTGGCTCGTGCGTGATGCCCTCGATGATGTCCTTTG 186173 |||| |||| || || || || ||| | | ||| |||||||| | || Sbjct 5948 GGTTATTATAGTGATTACCGATTCGCGGATCGAGGCAAACGCCTTCGATGATCTGTTTAC 6007 Query 186174 CATTCAGAC-----CATTCACCATTGCAAACGAGTCGAGCTCATTGAAAAACGACACGCG 186228 ||||||| | |||| ||| || ||| || ||||| || | | ||||| Sbjct 6008 TGTTCAGACCCTGGCTTTCAGCATAGC-----TGTCCAGTTCATTAAAGTAAGCTACGCG 6062 Query 186229 CATCGCGAGGTACGTATTCGCAAACAACTTGA-CGCTCTCTGCCTCGCGTGTTGACA-TG 186286 || ||| ||||| ||||| || || ||||| | ||| ||| || ||| ||| | || | Sbjct 6063 CAACGCCAGGTAGGTATTGGCGAATAACTTAATCGC-CTCAGCTTCG-GTGGAGTCAGTA 6120 Query 186287 AACAGCTTTGGCACATCCT 186305 |||||| | || | ||||| Sbjct 6121 AACAGCGTCGGGATATCCT 6139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921556077748040