Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq567 122 2e-22 >seq567 Length=338301 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| || |||||| ||||||||||| ||| Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTA 136137 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || || || ||||| || ||||| || ||||| | ||||||| || Sbjct 136138 AGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGA 136197 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || | ||||| | || | ||| ||| | | || || Sbjct 136198 ATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACA 136257 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || ||||| || || ||||| || || ||||| Sbjct 136258 TCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||||||||||||| || ||||| || || || | ||| ||||||||||| Sbjct 137958 TTCTTTCTGGATATTATAGTCGTTAAGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAA 138017 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | |||||| ||| || || ||||| || || || || || | ||| || Sbjct 138018 AATGAGTCTCTGTTG---GTCTGGCGGAATACCTTCCTTGTCTTGAATCTTAGATTTGAC 138074 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 | | || | |||||| | ||||| ||||| || || || || || |||| ||||| Sbjct 138075 GGTCTCGACCGAATCGTCAGGCTCTACATCGAGAGTTATAGTTTTGCCAGTCAACGTCTT 138134 Query 288459 GACGAATATCTGCAT 288473 || ||||||||||| Sbjct 138135 CACAAATATCTGCAT 138149 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||||||||| || ||||| |||||||| | || || || || || Sbjct 136341 TTCCTTCTGGATATTATAGTCACTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAA 136400 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||||| | || |||||||| ||||| || || || | ||||| | Sbjct 136401 AATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGT 136460 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || | ||| ||| | | || || || || || || ||||| ||||| | || || || Sbjct 136461 CTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCAC 136520 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 136521 GAAAATCTGCATT 136533 Score = 104 bits (114), Expect = 6e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 288259 CTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCG 288318 ||||| || | || | ||| ||| || |||||||| || ||| | ||||| || Sbjct 137479 CTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCA 137538 Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCT 288375 || || | |||||||||||||| ||||| | |||||| ||||||| |||||||| Sbjct 137539 TCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTG---ATCTGGGGGAATTCCTTCC 137595 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || || || || || | ||| || | || | ||| ||| | | || || || || || Sbjct 137596 TTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTA 137655 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| | || || ||||| ||||||||| Sbjct 137656 ATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGG 288384 |||||||||||||| ||||| | |||||| ||||||| |||||||| || || || Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTG---ATCTGGGGGAATTCCTTCCTTGTCTTGA 136920 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || | ||| || | || | ||| ||| | | || || || || || || ||||| Sbjct 136921 ATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTA 136980 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || ||||| ||||||||| Sbjct 136981 CCGGTTAAGGTTTTCACGAAAATCTGCATT 137010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567386848246