Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq567 125 6e-24 seq4076 100 3e-16 >seq567 Length=338301 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || || || |||| ||| || || ||||| || ||||||||||||||||| Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTA 136137 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||||||| || ||||| | |||| || || || || || ||| Sbjct 136138 AGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGA 136197 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || || | | || || | |||| | ||| || Sbjct 136198 ATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACA 136257 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | |||||| ||||| || ||||| |||||||||||||| Sbjct 136258 TCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| |||||||| |||||||| | || | ||| || | ||| Sbjct 137491 TGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCATCCTCAAGCTGT 137550 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | |||| || || || || || ||||| ||||| || |||||||| || Sbjct 137551 TTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATCTTA 137610 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || || || | |||| | ||| || || ||||||| || || |||||| Sbjct 137611 GATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTT 137670 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||| ||||| Sbjct 137671 AAGGTTTTCACGAAAATCTGCAT 137693 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || ||||||||||| ||| | | || | ||| || | ||| Sbjct 137947 TGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTAAGAGTGCGACCATCCTCAAGTTGC 138006 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | || | || || ||||| |||||||| ||||| || |||||||| || Sbjct 138007 TTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGAATACCTTCCTTGTCTTGAATCTTA 138066 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || || | ||| || ||| || |||||||| | |||||||| || Sbjct 138067 GATTTGACGGTCTCGACCGAATCGTCAGGCTCTACATCGAGAGTTATAGTTTTGCCAGTC 138126 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 138127 AACGTCTTCACAAATATCTGCAT 138149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || ||||| ||||||||||| | || | ||| ||||||||| Sbjct 137263 TGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTAAGTGTGCGACCATCCTCCAATTGT 137322 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || || || || ||||| ||||| || ||||| ||||| Sbjct 137323 TTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTTA 137382 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | | || || | || | ||| || || || || | ||||||||| || Sbjct 137383 GACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGATCGTTTTGCCAGTA 137442 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| |||||||| Sbjct 137443 AGTGTTTTAACAAAGATTTGCAT 137465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||||||| | |||| || || || || || ||||| ||||| || |||||||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||| | || || || | |||| | ||| || || ||||||| || || ||| Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| || ||||| ||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCAT 137009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || ||||| ||||| || || | || ||| || | ||| Sbjct 137719 TGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGC 137778 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | |||| || ||||| ||||| ||||| ||||| || || || || || Sbjct 137779 TTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTA 137838 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| | || || | ||| | ||| || |||||||| | ||||| || || Sbjct 137839 GACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTACCAGTG 137898 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 137899 AGTGTTTTGACGAAAATTTGCATC 137922 >seq4076 Length=468004 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| ||||||| || || | || |||||||||| |||||||||| ||||| || Sbjct 421547 CAAATCGAAACAGGTCAACCATTTATTGTCTACAAAGATGCCTGCAACAAGAAAAGTAAC 421606 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | ||| | ||| || |||| |||||||| ||| |||| ||| ||||||||||| Sbjct 421607 CAAAAGAACCTTGGAGTCATCAAATCAAGTAATCTATGCACCGAGATTGTCGAATACAGC 421666 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT 123759 ||| || || || || ||||| |||||| ||| |||| Sbjct 421667 GATCCCAATGAAACTGCTGTGTGCAATTTGTGTTCCATTT 421706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970672719720