Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2083 244 8e-59 seq4873 120 2e-21 seq4769 113 3e-19 seq4076 96.9 3e-14 seq4235 87.8 1e-11 >seq2083 Length=454743 Score = 244 bits (270), Expect = 8e-59 Identities = 1003/1564 (64%), Gaps = 32/1564 (2%) Strand=Plus/Plus Query 517170 TAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATAT 517229 |||||||||| || || | |||| || || | || || ||| ||||| |||| | Sbjct 102777 TAATCATTCTTTCGATCTCCTCTTTGGACAACCGACCCTTATCATTGGTAATTGTAAGAG 102836 Query 517230 TCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCA 517289 |||| | |||||||| || ||| || |||| ||||||||||| ||||| | Sbjct 102837 ATTTGGCGGTACCAGTTGATTTCTCCTGGGCGGTAACATCCAGAATACCATTAGCATCAA 102896 Query 517290 AATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT 517349 |||||| | || |||||||| || || || | |||| || | ||||| | || Sbjct 102897 GATCAAAGCTAACCTCAATTTGGGGAACACCACGAGGAGCGGGAGAAATCCCCAAAAGAT 102956 Query 517350 TAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGA 517409 ||| | || || ||||||||| | || | ||||| ||||| | || || | Sbjct 102957 CAAACTTACCAAGCAAGTTATTATCTCTCGTCATGGCACGTTCGCCCTCATATATCTGAA 103016 Query 517410 TAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAA 517469 || ||| ||| || || || | |||||| | |||| | | ||| ||| || | Sbjct 103017 TAAGGACTCCAGGCTGGTTGTCAGCATAAGTAGAAAATGTTTGAGTTTTCTTAACGGGGA 103076 Query 517470 TTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAG 517529 | || | ||||| |||||| |||||| | |||||| || ||||| | ||| | | Sbjct 103077 TAGTGGAATTTCTGGGTATAATAACGGTCATCACACCACCAGCCGTTTCGATACCCAATG 103136 Query 517530 AAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT-TTGACCAACA 517588 | ||||| || ||||||| | || | || | || | | | || || ||| Sbjct 103137 ATAGAGGGGTAACATCAAGCAAGAGGACATCCTTAA-TAGTGGAGTGGTCTTCACCCTTC 103195 Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 || ||||||||||||| ||||| |||||||| || || |||||||| || | || | | Sbjct 103196 AGGATAGCTGCTTGAACGGCAGCCCCATATGCTACGGCCTCATCAGGGTTGATTGTCTTA 103255 Query 517649 TTTAGTT---TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGA 517705 | | || |||| | | ||| | | ||| | ||| || || ||| Sbjct 103256 CAAGGCTCCATTCCACCAAAGTAGTCCTTTAGCAAACTTTGAAT---CTTTGGTATTCGA 103312 Query 517706 GATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAAT 517765 | || || ||||| || |||| || | | | || |||| || | ||| | Sbjct 103313 GTAGACCCACCAACCAAAACAACTTGGTCAATGGCAGTCTTGTCCATCTTGGCATCAACG 103372 Query 517766 AAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 517825 | | |||| ||||| || | ||| || || | | ||||||| | |||||| || Sbjct 103373 AGAGCTTTATCAACTGGACCCAGAGTTTTCCTGAAGAGGGCTGAACACAATTCTTCAAAC 103432 Query 517826 TTAGCTCTAGTAA-GAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA- 517883 || ||||| |||| | ||| || ||||| || || || | |||||||| ||| | Sbjct 103433 TTGGCTCTGGTAATGCTTGA-ATAGAGGTCAATGCCGTCAAAGAGAGAATCAATTTCGAC 103491 Query 517884 --TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAG 517941 ||| | | | | | ||| || | || ||||| || ||||| | || | | Sbjct 103492 GCTCGCATTGGTACTTGTTGAA---AGAGTCCGCTTAGCCCGCTCACAGACAGTTCGCAA 103548 Query 517942 TCTTCGTAAGGCTTTTGCTGATTGATT--CAAATCTGTTTTATATTTTCTCTTGAAATCT 517999 ||||| | | | ||| |||| || || ||| |||||| ||| ||||| || || Sbjct 103549 TCTTCTCATTGATC--GCTTATTGGTTGTCATATCCTTTTTATGTTTCCTCTTAAACTCC 103606 Query 518000 TCAACACACCATGTTACAA-GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCC 518058 ||| || | | || | || | || ||||| ||||| || ||||| | ||| | || Sbjct 103607 TCAGCAAAATGAGCAACCATGATG-TTGTCAAAGTCTTCTCCACCCAAATGAGTGTCACC 103665 Query 518059 TGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGT 518118 |||| | | |||| || | ||||| || || ||||| | |||||| ||| Sbjct 103666 GTTTGTAGATTTGACTTCAAAGACACCATCATCTTGATTCAAAATTGAAACATCAAAGGT 103725 Query 518119 TCCACCACCCATATCAAAAATAAGTACATT-----CATT-TCTTTGTCTTGGTTTTTATC 518172 |||||||| | ||||||||| | | || || | |||| || || ||||| Sbjct 103726 CCCACCACCAAGATCAAAAATCAACAGGTTTTCGCCACCCTTTTTGGTTTTCTTCTTATC 103785 Query 518173 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 518232 | ||| || |||| ||| ||||| || || || || || ||||| || |||||||||| Sbjct 103786 CAAACCGTATGCAATAGCTGCAGCGGTCGGCTCGTTGATGATTCTTAATGCATTAAGACC 103845 Query 518233 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292 || || | | || || ||||| || |||||||| ||||| || ||||| || ||||| Sbjct 103846 AGAGATGGTGGCAGCGTCCTTAGTTGCCTGTCTTTGAGAATCATTGAAATAGGCTGGAAC 103905 Query 518293 AGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 |||| ||||| || |||||| |||| | | || || || | ||||| || Sbjct 103906 GGTAACGACGGCCTCGGTTACTGTACATCCAAGAAAGGCCTCGGCTGTCTCCTTCATCTT 103965 Query 518353 ACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGA 518412 | || | ||| | ||||| | ||| |||| | | | || ||| || | || Sbjct 103966 GCCCAACACCATAGCAGAAATCTCTTCGGGGGTAAAATCTTTTACTTCTTTAAGGTAACT 104025 Query 518413 TACTTCAAAATATGGTTTATTACCAAC--ATTAATAACTTTAAATGGCCAGTATTTCATA 518470 || || | | || | || || | ||| || || | || ||||||| |||||| Sbjct 104026 GAC-TCGGATGACGGGCT-TTCCCTCCTTATTGATGACCTGGAAGGGCCAGTGCTTCATA 104083 Query 518471 TCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATA 518530 || | |||||| | || | ||| | |||||| | | || || ||||| | Sbjct 104084 TCCGCTTGAACTGACTCATCGTCGAAACGACGACCAATCAGCCTCTTGGCGTCAAAGACC 104143 Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 ||||| ||||| | |||| | | || ||| ||||||| || | | ||| Sbjct 104144 GTATTCTCCGGATTGGATCCAGCGTTGTCCTTTGCTACATCTCCGATAATTTTTTCAACA 104203 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 || || || || || || || || || || | || || ||||| || ||||| ||||| Sbjct 104204 TCCGTGAAGGATACGTACGAAGGGGTAGTTCTGTTCCCCTGATCGTTAGCAATGATTTCG 104263 Query 518651 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 ||||| || | ||| | || || |||||| | || ||||| ||||| || |||| | Sbjct 104264 ACTTTTCCGTGTTGAAAGACTCCAACACAAGAGTAGGTAGTTCCCAAATCTATTCCAACA 104323 Query 518711 GCAA 518714 |||| Sbjct 104324 GCAA 104327 >seq4873 Length=647740 Score = 120 bits (132), Expect = 2e-21 Identities = 201/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 ||||||||| || ||||||||||| || || | ||| | ||| |||||| || | Sbjct 351238 AAGACGATTGTCGAAATCTTCACCACCTAAATGAGTGTCGCCTTTAGTAGCTGCAACCTC 351179 Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 || | ||||| || | ||| | | || || ||| ||||||||||||| ||| | Sbjct 351178 AAATACTCCATTGTCGAAAGATAGAGCAGACACGTCAAACGTTCCACCACCCAAATCGTA 351119 Query 518137 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 || | || ||||| |||| | || ||| | | | ||| | |||| ||||||||| Sbjct 351118 AACGAATATGTTCATCTCTTGCTGTTTGTTGT---CGATTCCAAAAGCAATAGCAGCAGC 351062 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||||| || || |||| || | ||||| | ||| || || || ||||||||||| Sbjct 351061 TGTTGGCTCGTTGATAACTCGAAGTACATTCAAACCTGCGATGGCACCGGCATCTTTAGT 351002 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| |||| ||||| || || || || || || ||||| |||| Sbjct 351001 ACTTTGTCTCTGTGGGTCGTTGAAGTAGGCGGGGACTGTGATAACTGCAT 350952 >seq4769 Length=216924 Score = 113 bits (124), Expect = 3e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 || ||||||||| || || || || || ||||| || || || |||| | || ||||| Sbjct 157045 ATTAAGACCATATGCCAATGCGGCCGCTGTTGGCTCGTTGATGATTCGAACCACGTTAAG 157104 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 |||||| ||| || |||||||| || ||||||| ||| |||||||| ||||| ||||| Sbjct 157105 ACCAGCGATTGAACCAGCATCTTTCGTAGCTTGTCGTTGAGAATCGTTGAAATAGGCAGG 157164 Query 518290 AACAGTAATAACGGCAT 518306 |||||| || || |||| Sbjct 157165 AACAGTGATGACTGCAT 157181 >seq4076 Length=468004 Score = 96.9 bits (106), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 399304 ATCAAGGTGGTAA-ACGA--CCCGGTTCTTTTGCTATTTTTATTGAACCGTGGCATGGAG 399360 ||||||||||||| | || || || ||||||||||||| | ||||||| ||||| | | Sbjct 421218 ATCAAGGTGGTAACAAGAGGCCAGGATCTTTTGCTATTTATCTTGAACCCTGGCACGCTG 421277 Query 399361 ACATATTCTTTTTTCTAGATCTCAAGAAAAATACTGGAGCAGAAACAGAAAGAGCCAGAG 399420 | || ||| || || || |||| ||| ||||| ||||| || || || ||||| | Sbjct 421278 ATATTTTCGAATTCCTTGAACTCAGGAAGAATACGGGAGCCGAGGAAGTTAGGGCCAGGG 421337 Query 399421 ATTTATTTTTGGGTTTGATGATTAATGACATTTTCATGGAAAGAGTTTATAAAGACGATG 399480 |||||||| | | | | ||| || | |||||| |||||||| | |||||| | Sbjct 421338 ATTTATTTCTCGCTCTTTGGATGCCGGATTTGTTCATGAAAAGAGTTGAGGAAGACGGGG 421397 Query 399481 TTTGGTCATTAATGTGTCC 399499 |||| | |||||||| Sbjct 421398 ACTGGTGTCTGATGTGTCC 421416 >seq4235 Length=41994 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 668847 GATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGT 668906 |||||| || ||| || || |||||||||||||| |||||||| ||||| || ||| Sbjct 31744 GATTAAAAGCTAAGGACGGCCGTATTAGAGGAAACTTGATGGGCAAACGGGTTGATCATA 31685 Query 668907 CTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 |||||| | || ||||| ||||||| || ||| | || | ||||||||| |||| Sbjct 31684 GTGCACGCGCTGTCATTACACCTGATCCTCATCTTGATATCGACGAAGTTGGTACTCCTA 31625 Query 668967 TTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACA 669007 ||| || | ||| | ||| || |||||||| ||| Sbjct 31624 GATCTATAGCAATGAATTTGACTATTCCTGAAATTGTGACA 31584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780536718696442