Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2083 293 3e-74 seq4076 102 1e-16 seq3622 100 4e-16 seq4769 87.8 2e-12 >seq2083 Length=454743 Score = 293 bits (324), Expect = 3e-74 Identities = 1031/1593 (65%), Gaps = 38/1593 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| |||| || | || | ||| | | ||| |||| || || ||||| || Sbjct 102746 TCATCCTCAGCTTTGAACCTCTCGGAATCATTAATCATTCTTTCGATCTCCTCTTTGGAC 102805 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||||||||| ||||| |||| || || |||| | | || || | Sbjct 102806 AACCGACCCTTATCATTGGTAATTGTAAGAGATTTGGCGGTACCAGTTGATTTCTCCTGG 102865 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | |||| || ||||||||| ||||||| ||| || || || | |||||| || | Sbjct 102866 GCGGTAACATCCAGAATACCATTAGCATCAAGATCAAAGCTAACCTCAATTTGGGGAACA 102925 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| | ||| ||| | |||||| ||||||| || | ||||| || Sbjct 102926 CCACGAGGAGCGGGAGAAATCCCCAAAAGATCAAACTTACCAAGCAAGTTATTATCTCTC 102985 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | |||||| || ||||| | | ||| || |||| || || || Sbjct 102986 GTCATGGCACGTTCGCCCTCATATATCTGAATAAGGACTCCAGGCTGGTTGTCAGCATAA 103045 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || || || |||| ||||||| || || || | |||||| || |||| |||| Sbjct 103046 GTAGAAAATGTTTGAGTTTTCTTAACGGGGATAGTGGAATTTCTGGGTATAATAACGGTC 103105 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC---CAAGAGTAAC 6985 || | |||||| ||||||| || | || ||||| || || || |||||| || Sbjct 103106 ATCACACCACCAGCCGTTTCGATACCCAATGATAGAGGGGTAACATCAAGCAAGAG-GAC 103164 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | || | || || || |||||||| | | ||| || ||||| || | ||||| Sbjct 103165 A--TCCTTAATAGTGGAGTGGTCTTCACCCTTCAGGATAGCTGCTTGAACGGCAGCCCCA 103222 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 ||||| || |||||||| ||||| || || ||| | || | || ||| || ||| Sbjct 103223 TATGCTACGGCCTCATCAGGGTTGATTGTCTTACAAGGCTCCATTCCACCAAAGTAGTCC 103282 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || |||||| || || ||||| || || ||||| |||||||| | || || Sbjct 103283 TTTAGCAAACTTTGAATCTTTGGTATTCGAGTAGACCCACCAACCAAAACAACTT-GGTC 103341 Query 7166 ACTTTC-GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 | | | | || || ||||| | || || | ||| || || || ||| | ||| Sbjct 103342 AATGGCAGTCTTGTCCATCTTGGCATCAACGAGAGCTTTATCAACTGGACCCAGAGTTTT 103401 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 | ||| | | | ||||| ||| ||||| || | ||||||| || ||||| || Sbjct 103402 CCTGAAGAGGGCTGAACACAATTCTTCAAACTTGGCTCTGGTAATGCTTGAATAGAGGTC 103461 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTG--TTTGTGCCGTCGAAGATAACGTT 7342 || |||||| | | ||||||||||| | | | | || || | | | || | || Sbjct 103462 AATGCCGTCAAAGAGAGAATCAATTTCGACGCTCGCATTGGTAC--TTGTTGAAAGAGTC 103519 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || |||||||| | ||||| || | | | | ||| || | ||| Sbjct 103520 CGCTTAGCCCGCTCACAGACAGTTCGCAATCTTCTCATTGATCGCTTATTGGTTGTCATA 103579 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || || |||||||| | |||||||| |||| || || || | | || || Sbjct 103580 TCCTTTTTATGTTTCCTCTTAAACTCCTCAGCAAAATGAGCAACCATGATGTTGTCAAAG 103639 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||| |||||||| || || || || || | |||||||||||||| ||| | || Sbjct 103640 TCTTCTCCACCCAAATGAGTGTCACCGTTTGTAGATTTGACTTCAAAGACACCATCATCT 103699 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG--TTCG 7580 || || | ||||||||||| || |||||||| || |||||||| | | | |||| Sbjct 103700 TGATTCAAAATTGAAACATCAAAGGTCCCACCACCAAGATCAAAAATCAACAGGTTTTCG 103759 Query 7581 ----TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | ||| |||||||| | |||||| || ||||| || || || || || Sbjct 103760 CCACCCTTTTTGGTTTTCTTCTTATCCAAACCGTATGCAATAGCTGCAGCGGTCGGCTCG 103819 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || | || || || || |||| || || || || || || || || |||| Sbjct 103820 TTGATGATTCTTAATGCA-TTAAGACCAGAGATGGTGGCAGCGTCCTTAGTTGCCTGTCT 103878 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| ||||| || || ||||| || || || ||||| || || || ||| | || || Sbjct 103879 TTGAGAATCATTGAAATAGGCTGGAACGGTAACGACGGCCTCGGTTACTGTACATCCAAG 103938 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 | | | || || | || ||||| ||| | ||||| | ||||||||||| | | Sbjct 103939 AAAGGCCTCGGCTGTCTCCTTCATCTTGCCCAACACCATAGCAGAAATCTCTTCGGGGGT 103998 Query 7816 AAACTGTTTCGTTTCACCGTTAA---AATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 ||| | || || | | |||| || ||| || | ||| || || | | Sbjct 103999 AAAATCTT---TTACTTCTTTAAGGTAACTGACTCGGATGACGGGCTTTCCCTCCTTA-- 104053 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGAC---CTGTTGGTCCGAAAA 7929 ||| |||| | | ||| | |||||||| |||| || || | || ||||| Sbjct 104054 -TTGATGACCTGGAAGGGCCAGTGCTTCATATCCGCTTGAACTGACTCATCGT-CGAAA- 104110 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | || || || | ||| || ||||| || || || | || || | | | Sbjct 104111 -CGACGACCAATCAGCCTCTTGGCGTCAAAGACCGTATTCTCCGGATTGGATCCAGCGTT 104169 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 || ||| || | || ||||||| |||| | ||||| || | |||||||| || Sbjct 104170 GTCCTTTGCTACATCTCCGATAATTTTTTCAACA---TCCGTGAAGGATACGTACGAAGG 104226 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 ||| |||| ||||| || ||||| ||||| ||||| || ||| ||| |||| || Sbjct 104227 GGTAGTTCTGTTCCCCTGATCGTTAGCAATGATTTCGACTTTTCCGTGTTGAAAGACTCC 104286 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACC 8142 || || || || || ||||| ||||| || || Sbjct 104287 AACACAAGAGTAGGTAGTTCCCAAATCTATTCC 104319 >seq4076 Length=468004 Score = 102 bits (112), Expect = 1e-16 Identities = 318/485 (66%), Gaps = 27/485 (6%) Strand=Plus/Minus Query 104706 ATAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGA 104765 |||||||||| | ||| | ||||| |||| ||||| || || || || |||||||| Sbjct 422245 ATAGATATTGCTGGTAAAAGGTTCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGA 422186 Query 104766 TGCGGTAGGCATAGGTGCAAGAAGA----AGACTATT-CATAGTTCCTTTCTTAACAAGT 104820 ||| || |||||| |||| || ||||| || | || | | | || | | | Sbjct 422185 TGCAGTGGGCATA----CAAGTAGTCAATAGACTGTTACGTAAGCCATATTTTGAAATAT 422130 Query 104821 TTACG--CATGGCATTCCAATCGTATCGACCACTAAACTTTGGGTCTCGATCCC-ACATA 104877 || | || | ||| |||||| ||| || || ||| | |||| ||||| Sbjct 422129 TTTCCTTCAAGCCATCCCAATC-------CCATAAATCTGATGGTGTTACTCCCCACATA 422077 Query 104878 TCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAGGACCGTAC 104937 ||| |||||||||| |||| ||| || || || | | | |||||||||||||| | | Sbjct 422076 TCGTATTGAAGAATCCCTTGACTCGCTGGGGAGCCTTCATAAGTTTCATAAGGACCATGC 422017 Query 104938 ATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGAATATATCA 104997 ||| | | ||| || || || || || | || || ||||| || || || || | Sbjct 422016 TTTTGGCTCAATTCGCATGAAGACTCAAGGGCAGCATGATAGATTGTCTCAAAAATTTTT 421957 Query 104998 ATGTTGAGTTTTCTCGATTCTTCTGAACCGAATG--TCATTCTTAACATGATAAACACGT 105055 | || |||| | ||| |||||| |||| | | | | || || | | || | | Sbjct 421956 TTATTAAGTTCATGGGCTTCCTCTGAATCGAAAGGATAACGCATA--ATTACATACGCAT 421899 Query 105056 CAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCGT 105115 |||| | ||| |||||||| || || || ||||| ||||| |||| || | |||| | Sbjct 421898 CAGCCAAACCTTGAACACCTATCCCAATTGGTCTATGACGACTATTAGATC--TTCCAGC 421841 Query 105116 TTTCGG--TTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTTT 105173 || || |||||||| |||||| || ||||| | ||| |||| ||||| Sbjct 421840 TTCAGGAACAGGGTAAAACGAGCGATCAATGACTTTGTTCATATTAACAGTAATGATTTT 421781 Query 105174 CGTAA 105178 |||| Sbjct 421780 AGTAA 421776 >seq3622 Length=296610 Score = 100 bits (110), Expect = 4e-16 Identities = 215/314 (68%), Gaps = 7/314 (2%) Strand=Plus/Minus Query 115180 CGATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGACTA 115239 ||||| || ||| | || ||||| | |||| | | || |||||| || || | ||| Sbjct 278496 CGATCAGCGACAAACTCAATATATTTGCACATCTCAATGGCATTCATTCCGATCAAACT- 278438 Query 115240 CAC-GGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTC 115298 ||| || ||||| || || | || |||||||||||| ||| || || |||||| Sbjct 278437 CACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATTTCAACTGCATCCACAATAATTCT 278378 Query 115299 TTCAATTGTATTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCAACC--GCAAAT 115356 || || | ||| |||||||| |||| ||| || || ||| | || || Sbjct 278377 TTGAACCAGAGATTGTGATGGTTTCACGGTTAA-ATGACTAAACAT-CAAGCATGCGAAA 278320 Query 115357 TCTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGT 115416 || || | || ||||| | || |||||||||||||| || || || || | | Sbjct 278319 TCAGTATGAAGTCCCTCATCCCTGCTGATGAGTTCATTACTGAAGGCCAAGCCAGGCATT 278260 Query 115417 AACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCA 115476 || || | |||||||||||||||||| ||| ||| ||| || ||||| || ||||| Sbjct 278259 AAACCACGCTTTTTTAACCAAAAAATGGCAGCAAATGAACCAGAAAAGAAAATTCCTTCG 278200 Query 115477 ACACACGCAAAGGC 115490 ||| | |||||||| Sbjct 278199 ACAGA-GCAAAGGC 278187 >seq4769 Length=216924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 7604 AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCA 7663 ||||| || || | || ||||| ||||| || || || || |||| ||| || ||| Sbjct 157049 AGACCATATGCCAATGCGGCCGCTGTTGGCTCGTTGATGATTCGAACCACGTTAAGACCA 157108 Query 7664 GCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACC 7723 || || | | ||||||||||| ||||||||||| |||||||| || ||||| || || Sbjct 157109 GCGATTGAACCAGCATCTTTCGTAGCTTGTCGTTGAGAATCGTTGAAATAGGCAGGAACA 157168 Query 7724 GTTACGACCGCGTCCGTGACTTT 7746 || | ||| || | | ||| ||| Sbjct 157169 GTGATGACTGCATTCTTGATTTT 157191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635087094255880