Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq567 125 5e-24 >seq567 Length=338301 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | || ||||||||| || |||||||| | Sbjct 137923 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTA 137982 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || || || ||||| || || || |||| || |||||| |||| Sbjct 137983 AGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGA 138042 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||||| | | ||| || | | ||| ||| Sbjct 138043 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTACA 138102 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATAT 34983 |||| ||||| ||||| || || | ||||||||||| |||||||||| Sbjct 138103 TCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCATAT 138151 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||||||| | ||||||||| | || ||||||||| ||||||||||| Sbjct 137693 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137752 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | || |||| || || || ||||||||||| || |||| ||||| || | | Sbjct 137753 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137812 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| ||||| | | | || ||| || ||||| Sbjct 137813 GAATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAA 137872 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || ||||| || ||||| || || || || || ||||| Sbjct 137873 CATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||||||| | ||||||||| | || ||||||||| ||||||||||| Sbjct 137009 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137068 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | || |||| || || || ||||||||||| || |||| ||||| || | | Sbjct 137069 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137128 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| || || | | | || ||| || ||||| Sbjct 137129 GAATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAA 137188 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || || ||||| || ||||| || || || || || |||||| Sbjct 137189 CATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCATA 137238 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 || ||||||||||| | ||||||||| | ||| ||| ||||| || || || || | Sbjct 137467 CCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTT 137526 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | || |||| || ||||||||||| || || || |||| || || ||| | || Sbjct 137527 AAAG-TGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGG 137585 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| |||||| ||| || | | | || || || ||| || Sbjct 137586 AATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCAC 137645 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | || || || || || || | || ||||| || |||||||| Sbjct 137646 ATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610822590696