Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3622 237 2e-57 seq4076 181 1e-40 >seq3622 Length=296610 Score = 237 bits (262), Expect = 2e-57 Identities = 641/994 (64%), Gaps = 95/994 (10%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| | || | ||||| || ||||| |||||||| || | ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAt---------------------ttttt 18769 |||| ||||| |||||||||| |||| | || ||| | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 18770 tGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATAT 18829 ||| || | | || | || | ||| || ||||| | ||||||| || |||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATATTTGCACATCTCAA 278460 Query 18830 CACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATAT 18889 ||||||||| || || | ||||||||||| || || | ||| |||| ||| || | Sbjct 278459 TGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATTT 278400 Query 18890 TTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAG----A 18945 ||||| || ||||| | ||| | ||| || ||| | | | Sbjct 278399 CAACTGCATCCACAATAATTCTTTGAACCAGAG----ATTGTGATGGTTTCACGGTTAAA 278344 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 || |||||||||| ||||| |||||| ||| |||||||| || || || || | |||| Sbjct 278343 TGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAGTTCA 278284 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| || | || |||||||| | || | ||||||||||| || || | ||||||| Sbjct 278283 TTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGCAAAT 278224 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCT----TTCT----- 19116 || ||||||||||| || ||||| || | ||||| ||||||| || || | Sbjct 278223 GAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGTAAGGT 278165 Query 19117 -CCATAACTAGCATCAT--------TATTATGA---ATCCATTTCAGTGCCCAATCAGCC 19164 || | ||| || || || | ||| |||||||| || ||||||| |||| Sbjct 278164 GCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAATTAGCC 278105 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTA 19224 || || |||||||| | || || | || | ||| | | |||||| |||||| || Sbjct 278104 TTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTTCATCTATA 278045 Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 |||||||| |||| || ||||| | ||||||||| || ||||||| ||||| | |||| Sbjct 278044 TCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAACAGCC 277985 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC- 19343 | ||| |||||||| ||| | | |||||| | | | || | || | |||| |||| Sbjct 277984 ACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCTCGCAAAAACGTTTCA 277925 Query 19344 -----------------------GACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || | |||||| || ||||| |||||||| || ||| Sbjct 277924 GCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTCGCAGCA 277865 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA--------- 19431 ||||| || | || | ||| ||||| ||| | | || | || Sbjct 277864 AAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAACGAAAAA 277805 Query 19432 --TT---------CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAA 19480 || |||||||| | || ||||||||||| || ||||| || ||||||| Sbjct 277804 CCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAGTCCAAA 277745 Query 19481 AAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAA 19540 | |||||| | || ||||| || | | ||| |||||| | || | |||||||| |||| Sbjct 277744 ACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAAAGATAA 277685 Query 19541 CAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 | || | ||| ||| || |||| |||||| Sbjct 277684 CGAAACGATTAGGATTGGGTTGGAGAACAGGTTC 277651 >seq4076 Length=468004 Score = 181 bits (200), Expect = 1e-40 Identities = 944/1510 (63%), Gaps = 79/1510 (5%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||| | ||||||| | || | |||||||||||||||||| || Sbjct 422652 TTATCAACAGTAAATTGAATTGGACTTGCAGCAGGGCGTGTTCGTAAATAATACATGCCG 422593 Query 47034 GTCTTTAAACCT------AAAC-----TCCA------TCCA----TAGAAATGCATACTA 47072 ||||||||||| |||| |||| |||| ||||||||||||||| Sbjct 422592 GTCTTTAAACCCTAAATAAAACACGTATCCACCTTTTTCCAGGAATAGAAATGCATACTA 422533 Query 47073 GTTAATTTAGAATAACTA-GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 | | || | || || ||||| || | | || ||| ||||||||||| ||||| || Sbjct 422532 CTGATCTT-GCTTAGCTTTGGTTCAGATACAAAAAGATTGAGAGATTGACTTTGATCTAT 422474 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | ||| | | | |||||| ||| | ||| | | | || |||||| || Sbjct 422473 ATATGGAGCGCGATCAGCACTTTGATCGATAATGGTCTTCATCGATAACTCCCAGCTAGT 422414 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgtt 47248 ||| || | || | | || |||| ||||| | | ||| |||||| || || | ||| Sbjct 422413 TTTGTATAATTCTCTTATATCTTTTGGGATAGCTTCTATGTTTTGAACTGAGCCCCTGTT 422354 Query 47249 ttctataattttgttttttaattcatttgaccaaagttttcgttc----agttaatgttt 47304 || | ||| || ||| | | | ||||||| |||||| || Sbjct 422353 CTCAAGAATCTT--------------TTGCCGCATCTCTTCGTTCCACAAGTTAAGTTTG 422308 Query 47305 ttaaAAG-----ATGAGGA-----TTAACAATTTGAAATTCTCCAGATAGTACTCTACGG 47354 | ||| |||||| || || | ||| ||||| || || | |||| || Sbjct 422307 ATCAAATCATTCATGAGGTATCTGTTCACCACTTGGAATTCACCTGAAATCACTCGGCGA 422248 Query 47355 CTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTT 47414 |||| ||||| || ||| | |||||| | || ||||| |||||||| ||||||| || Sbjct 422247 GTATAGATATTGCTGGTAAAAGGTTCTGTGGACTCATTGTTTCCAAATATTTGAGATGTG 422188 Query 47415 GATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNN 47474 ||||| || ||||| | | | |||| || || | || ||||||||| || | Sbjct 422187 GATGCAGTGGGCATACAAGTAGTCAATAGACTGTTACGTAAGCCATATTTTGAAATATTT 422128 Query 47475 NNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGA 47534 | ||||||||| | ||||||||| || ||| | ||| |||||| Sbjct 422127 TCCTTCAAGCCATCCCAATCCCATAAATCTGATGGTGTTACTCCCCACATATCGTATTGA 422068 Query 47535 AGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCG 47594 ||||| |||| ||| || || || | ||| |||| ||||||||| | ||| || Sbjct 422067 AGAATCCCTTGACTCGCTGGGGAGCCTTCATAAGTTTCATAAGGACCATGCT-TTTGGCT 422009 Query 47595 -AGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | ||| || | || | ||| || ||| ||||| ||||| |||||| | || || Sbjct 422008 CAATTCGCATGAAGACTCAAGGGCAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAG 421949 Query 47654 ATTCCTTG-CTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 ||| | | |||| ||| || |||||||| | | ||| ||||| | Sbjct 421948 -TTCATGGGCTTCCTCTGAATCGAAAGGATAACGCATAATTACATACGCATCAGCCAAAC 421890 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 |||||||||| || ||||||||||||||| ||||||| ||||||| || | | Sbjct 421889 CTTGAACACCTATCCCAATTGGTCTATGACGACTATTAGATCTTCCAGCTTCAGGAACAG 421830 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 | || ||| || | ||| || | | |||||| Sbjct 421829 GGTAAAACGAGCGATCAATGACTTTGTTCATATTAACAGTAATGATTTTAGTAATTTCGT 421770 Query 47833 TTAATTTATTAAAATCAAACTTGTTATTT-ATAACA----------AACCTATT----AA 47877 | ||| || |||| || || |||| |||| || |||| || Sbjct 421769 GAAGTTTCTTGAAATTGAAGGTGGGATTTGATAATTTCTTATTGTCAATATATTTAGGAA 421710 Query 47878 GTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTT 47937 | | || || | ||| || ||||| ||||| |||| | |||| | || | Sbjct 421709 GCGAAATGGAACACAAATTGCACACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCT 421650 Query 47938 CAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTAC 47997 | | |||||||||| ||||||| || | || | || ||| | ||||| | Sbjct 421649 CGGTGCATAGATTACTTGATTTGATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGC 421590 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATT 48057 | || || ||||| | ||||| ||| || ||||| || || | || | || || Sbjct 421589 AGGCATCTTTGTAGACAATAAATGGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGA 421530 Query 48058 TCCAAACAGTCCTAGCCTTTATAACAGCTCTAGC--TTTATTATCATGTTCGTATTTAGT 48115 ||| |||| | | || || || || ||| || ||| |||||| | Sbjct 421529 ACCA--CAGTTTTTGGGCTTTTACTTTCTGTACGAATTTTTTCTCAGATTCGTAGCGCAT 421472 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATC-TAACCCAGGACATTCATTAGGAC 48174 ||| | | |||| ||||| || || || || | | || || |||||| ||| ||||| Sbjct 421471 ATAGAGCCTCTCGAATTCTTCTCCGTA-ACTGTCTGATAGGCCGGGACATGCATGAGGAC 421413 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 |||||| |||| ||| | || | | ||||| |||| || | ||| || ||||||| Sbjct 421412 ACATCAGACACCAGTCCCCGTCTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAA 421353 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 |||| | |||||||||||| | || | ||| || || ||||| | | ||||||| Sbjct 421352 GAGCGAGAAATAAATCCCTGGCCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAA 421293 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | || || | |||||||| ||||| ||||| | ||| || || | ||||| | | Sbjct 421292 GGAATTCGAAAATATCAGCGTGCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCT 421233 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | ||||| |||||||| | || | || | ||||| | || || | |||||| || | Sbjct 421232 TGTTACCACCTTGATCGACGTAACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGA 421173 Query 48415 TACCATTTGA 48424 ||| || || Sbjct 421172 GACCGTTAGA 421163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068349245480