Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2083 156 3e-32 seq567 131 1e-24 seq4769 105 5e-17 seq4235 87.8 1e-11 >seq2083 Length=454743 Score = 156 bits (172), Expect = 3e-32 Identities = 370/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || |||||||| ||||| || || ||||||||| || | ||| | || ||| Sbjct 104325 GCTGTTGGAATAGATTTGGGAACTACCTACTCTTGTGTTGGAGTCTTTCAACACGGAAAA 104266 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||| || ||||| || ||||||||||| || || || || || |||||| Sbjct 104265 GTCGAAATCATTGCTAACGATCAGGGGAACAGAACTACCCCTTCGTACGTATCCTTCACG 104206 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGG---TAATCCTACC 550168 || |||| | | | || |||| |||||| | ||| | |||| ||||| Sbjct 104205 GATGTTGAAAAAATTATCGGAGATGTAGCAAAGGA-CAA--CGCTGGATCCAATCCGGAG 104149 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 ||||| | ||||| || || | | ||||| | |||| | ||| | | ||||| Sbjct 104148 AATACGGTCTTTGACGCCAAGAGGCTGATTGGTCGTCGTTTCGACGATGAGTCAGTTCAA 104089 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT-TGA 550287 || ||||||||||| ||||| ||||| | | ||| ||||| || || || Sbjct 104088 GCGGATATGAAGCACTGGCCCTTCCAGGTCATCAATAAGGAGGGAAAGCCCGTCATCCGA 104029 Query 550288 ---AGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 || ||| | | ||| | || ||| | ||| | || ||| | ||||| ||||||| Sbjct 104028 GTCAGTTAC-CTTAAAGAA---GTAAAAGATTTTACCCCCGAAGAGATTTCTGCTATGGT 103973 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 || || ||||| | |||||| || ||| |||| ||| || || || || Sbjct 103972 GTTGGGCAAGATGAAGGAGACAGCCGAGGCCTTTCTTGGATGTACAGTAACCGAGGCCGT 103913 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | || || ||||| ||||| ||||| || ||| | || || ||||| || |||| Sbjct 103912 CGTTACCGTTCCAGCCTATTTCAATGATTCTCAAAGACAGGCAACTAAGGACGCTGCCAC 103853 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || |||| ||||||| | | || ||||| || || || ||||| || ||||||| Sbjct 103852 CATCTCTGGTCTTAATGCATTAAGAATCATCAACGAGCCGACCGCTGCAGCTATTGCATA 103793 Query 550525 TGGACTTGATAA 550536 || | ||||| Sbjct 103792 CGGTTTGGATAA 103781 Score = 125 bits (138), Expect = 6e-23 Identities = 261/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||| || || ||||| || || ||||||||||||| || || Sbjct 103245 AACCCTGATGAGGCCGTAGCATATGGGGCTGCCGTTCAAGCAGCTATCCTGAAGGG---- 103190 Query 552270 ACTGATGAAAA----ACTACAAAATAT-TGTACTTG-TAGATGTTACTCCTCTATCTCTT 552323 ||| || | |||| || || | |||| | |||||||| |||||||| | Sbjct 103189 --TGAAGACCACTCCACTATTAAGGATGTCCTCTTGCTTGATGTTACCCCTCTATCATTG 103132 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | ||||| | ||| ||| | ||||| | |||| |||||| | ||||| || Sbjct 103131 GGTATCGAAACGGCTGGTGGTGTGATGACCGTTATTATACCCAGAAATTCCACTATCCCC 103072 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 ||| ||| ||| ||||||||| ||| | || || || ||| || ||||| Sbjct 103071 GTTAAGAAAACTCAAACATTTTCTACTTATGCTGACAACCAGCCTGGAGTCCTTATTCAG 103012 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 || | ||| || ||| | | || | ||||||||| ||||||| ||| || | Sbjct 103011 ATATATGAGGGCGAACGTGCCATGACGAGAGATAATAACTTGCTTGGTAAGTTTGATCTT 102952 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || ||| |||| ||||||||||| || || |||||||| |||| || ||| | ||| Sbjct 102951 TTGGGGATTTCTCCCGCTCCTCGTGGTGTTCCCCAAATTGAGGTTAGCTTTGATCTTGAT 102892 Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589 || ||||| ||| || |||| || || Sbjct 102891 GCTAATGGTATTCTGGATGTTACCGC 102866 >seq567 Length=338301 Score = 131 bits (144), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || |||||| |||||| || || || ||| ||||| | |||||||| Sbjct 137031 CAAG-TGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAA 137089 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| |||||||||||||| ||||| |||||||| || ||||||||||| || || || | Sbjct 137090 GTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGA 137149 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 | || || || | ||||| | ||| || | | |||||||| | ||||||| Sbjct 137150 TCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTAC 137209 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || ||||| ||||||||||||||| Sbjct 137210 CAGTGAGTGTTTTGACGAAAATTTGCATA 137238 Score = 129 bits (142), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || |||||| |||||| || || || ||| ||||| | |||||||| Sbjct 137715 CAAG-TGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAA 137773 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| |||||||||||||| ||||| |||||||| || ||||||||||| || || || | Sbjct 137774 GTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGA 137833 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 | || || || | ||||| | ||| || | | |||||||| | ||||||| Sbjct 137834 TCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTAC 137893 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| |||||||||||||| Sbjct 137894 CAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 116 bits (128), Expect = 3e-20 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| || | |||||| ||||||||||| ||||| || |||||||||||||||||||| || Sbjct 137310 ATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTT 137369 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 ||||| ||||| ||||| | ||| | | |||| || | | || || || | Sbjct 137370 GTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGAT 137429 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| |||||||| |||||||| || ||||||||| Sbjct 137430 CGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCATA 137466 Score = 107 bits (118), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||| || ||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 137512 ATATTGTAATCGCTTAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTC 137571 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || ||||| || ||||||||||| || |||||||| || |||||| | ||||| | Sbjct 137572 TGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAG 137631 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || || | | || || ||||||| || ||||| || | ||||| |||||||| || Sbjct 137632 TC-GTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTG 137690 Query 563472 CAT 563474 ||| Sbjct 137691 CAT 137693 Score = 104 bits (114), Expect = 2e-16 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||| || || ||||||||||| ||||| || |||||||| ||||||||||| ||| Sbjct 136378 TCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTA 136437 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 |||||||| || || || | ||||| | || || | | || || ||||||| Sbjct 136438 TCTTGAATCTTAGACTTCACAGTCTCAACAGAGTC-GTTGGGCTCCACATCCAGAGTAAT 136496 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || | ||||| |||||||| ||||| Sbjct 136497 TGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 136532 Score = 98.7 bits (108), Expect = 8e-15 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 563271 ATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTA-GAGTTCTTGAATCTTCAAGTT 563329 |||||| ||| |||||| ||||| ||||| |||| | || | ||| || | || Sbjct 136101 ATGAAGTGTAGATTCTTTCTGGATATTATAATC-GCTAAGCGTACGACCATCCTCCAATT 136159 Query 563330 GTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTT 563389 | || || |||||||| ||||| || ||||| |||||||||||||| || ||||| || | Sbjct 136160 GCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTCTTGGATCT 136219 Query 563390 TTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCA 563448 | || || | ||||| | || || || | || || ||||| | ||||| || Sbjct 136220 TAGACTTCACAGTCTCAACAGAGTC-GTTTGGCTCCACATCCAGAGTGATCGTTTTTCCG 136278 Query 563449 GTAAGAGTTTTAACGAAAATTTGCATA 563475 || || ||||| || |||||||||||| Sbjct 136279 GTGAGTGTTTTGACAAAAATTTGCATA 136305 Score = 91.5 bits (100), Expect = 1e-12 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 |||||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACC 563447 || |||||| | ||||| | || || | | || || ||||||| || ||||| Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTC-GTTGGGCTCCACATCCAGAGTAATTGTCTTACC 136982 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| |||||||| ||||| Sbjct 136983 GGTTAAGGTTTTCACGAAAATCTGCAT 137009 >seq4769 Length=216924 Score = 105 bits (116), Expect = 5e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 |||||||| |||| | | | || ||||| | || | | | ||||||| || ||| Sbjct 157227 AAAATGAAGGAAACCGTCGATAATTACGTTGGACTTAAAATCAAGAATGCAGTCATCACT 157168 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || ||||| || || || ||||| |||||||| ||||||||||| || ||| Sbjct 157167 GTTCCTGCCTATTTCAACGATTCTCAACGACAAGCTACGAAAGATGCTGGTTCAATCGCT 157108 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||||| || |||| || ||||| || || || || || ||| | |||||||| ||| Sbjct 157107 GGTCTTAACGTGGTTCGAATCATCAACGAGCCAACAGCGGCCGCATTGGCATATGGTCTT 157048 Query 550532 GAT 550534 || Sbjct 157047 AAT 157045 >seq4235 Length=41994 Score = 87.8 bits (96), Expect = 1e-11 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 390811 ATACCATTATCACCATATACACATTGAATTAATTTGTCATTGGCATTTCTTACGGTACCA 390870 || |||| || |||||| | |||||||| ||| ||| | ||||| || || ||| Sbjct 30082 ATTCCATCTTCTCCATATCGTAACTGAATTAAGTTGCGATTCGAGTTTCTAACAGTTCCA 30141 Query 390871 TCATACTCTACTTTAATG-TCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGT 390929 ||||| | || |||| ||| | ||||| | || | ||||||||||||||| Sbjct 30142 TCATAGTGAACCATAATACTCTCCATGGCTTTTATC-AACCGACGTTGGATATAACCAGT 30200 Query 390930 GTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAA 390989 |||| |||||||| || |||| |||| |||||||| ||| ||||| | ||||| || Sbjct 30201 TTCTGAGGTTTTAATAGCTGTATCGATAACACCTTCTCGTCCACCCATAGCATGGAAAAA 30260 Query 390990 AAATTCCATAGG 391001 || || |||| Sbjct 30261 GAACTCGCTAGG 30272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028991543875930