Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq567 113 3e-20 >seq567 Length=338301 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | ||||| || || ||| || || || ||||||||||| | Sbjct 137467 CCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTT 137526 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || || | ||| || || || || ||||||| ||||||||| | |||| Sbjct 137527 AAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGA 137586 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| |||||| | | ||||| || | |||||| Sbjct 137587 ATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACA 137646 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || || ||||| || ||||||||||| Sbjct 137647 TCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||| || ||| ||| | || |||| || | ||||||||||||||| Sbjct 136342 TCCTTCTGGATATTATAGTCACTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAA 136401 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| ||||||||| | ||||| || ||||| || |||||| || |||| Sbjct 136402 ATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTC 136461 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | ||||| || | |||||| |||| ||||| || || || || || ||||| || Sbjct 136462 TCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACG 136521 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 136522 AAAATCTGCAT 136532 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || ||||| || ||||| ||||| || | ||| | || Sbjct 136093 AAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGTACGACCATCC 136152 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| ||||| || ||||| ||||||| ||||||||| | |||| || |||||||| Sbjct 136153 TCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTCT 136212 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||| || |||| | ||||| || | |||||| |||| || |||||| Sbjct 136213 TGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGATCGTT 136272 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || | ||||| |||||||| ||||| Sbjct 136273 TTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48621 TGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATC 48680 || || || || || ||||||| ||||||||| | ||||| || |||||||| |||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 48681 TTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || |||||| | | ||||| || | |||||| |||| ||||| || || || Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || ||||||||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCAT 137009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910872108511