Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1155 628 5e-176 >seq1155 Length=6594 Score = 628 bits (696), Expect = 5e-176 Identities = 1105/1589 (70%), Gaps = 53/1589 (3%) Strand=Plus/Minus Query 3440 TTATGGGAACTTTCTAAGGGGGGCACCATGTTTGATTACAAGATTTCCAAACATCCGCAT 3499 ||||| ||| || ||||| | || ||||||||||| || ||||||||||||| || Sbjct 2560 TTATGTGAA--TTGTAAGGATG-CAACATGTTTGATTTTCAGGTTTCCAAACATCCCCAC 2504 Query 3500 TTCGATGAAGCCTGTAGGGCTTTTGCACTGCGCCACAACCTGGTGCAACTGGCAGAACGT 3559 | || ||||| || |||||||||| | ||| |||||| ||| | | |||||||| ||| Sbjct 2503 TATGACGAAGCATGCCGGGCTTTTGCGCAGCGTCACAACATGGCGAAGCTGGCAGAGCGT 2444 Query 3560 GCAGGCATGAATGTGCAGATTCTGCGGAACAAGCTGAACCCAGCTCAACCTCATTTATTA 3619 || |||||||| || || | | || |||||||| ||||| | || ||||| || Sbjct 2443 GCGGGCATGAACGTTCAAACGTTACGTAACAAGCTCAACCCGGAACAGCCTCACCAGTTC 2384 Query 3620 ACTGCACCAGAAATCTGGTTGCTTACCGATCTGACTGAAGATTCAACGCTGGTAGATGGT 3679 || | || ||| | ||| | || || || ||||| ||||| ||||| || || |||||| Sbjct 2383 ACGCCGCCTGAATTGTGGCTACTGACTGACCTGACCGAAGACTCAACCCTCGTTGATGGT 2324 Query 3680 TTTCTGGCTCAGATTCACTGCCTGCCATGTGTACCGATTAATGAGGTGGCAAAAGAGAAA 3739 |||||||| |||||||| |||||||||||||||||| |||||||| |||| ||||| ||| Sbjct 2323 TTTCTGGCGCAGATTCATTGCCTGCCATGTGTACCGGTTAATGAGCTGGCTAAAGACAAA 2264 Query 3740 CTGCCACATTACGTCATGAGTGCAACCGCAGAGATCGGGCGTGTTGCTGCA-GGTGCGGT 3798 ||| ||| |||||| | |||| || |||| || | || | |||||||| Sbjct 2263 TTGCAGTCTTATGTCATGCGCGCAATGCGTGAACTCGG-CGAGCTGGCGAGCGGTGCGGT 2205 Query 3799 ATCTGGCGATGTAAAAACCAGTGCAGGTCGTCGTGATGCTATCAGCAGCATTAACTCTGT 3858 ||||| || ||| ||| || | | || ||| |||| ||| Sbjct 2204 ATCTGATGAACGCCTGACCTCTGCCCGTAAGCACAACATGATTGAAAGCGTTAATGCTGG 2145 Query 3859 AACACGACTGATGGCGCTGGCTGCTGTTTCATTGCAGGCCCGTTTACAGGCTAACCCTGC 3918 | || || || || || | || | | ||||| || ||| | ||| |||| || || Sbjct 2144 CATTCGTATGTTGTCGTTGTCGGCGCTGGCGTTGCATGCGCGTCTGCAGACTAATCCCGC 2085 Query 3919 GATGGCGAGTGCAGTTGATACCGTGACTGGCCTCGGTGCTTCATTCGGTTTGCTGTGAGG 3978 ||| |||| | || |||||| ||| || | || || || ||||| || | ||||| Sbjct 2084 TATGTCGAGCGTGGTCGATACCATGAGCGGTATTGGCGCATCCTTCGGGCTGATTTGAGG 2025 Query 3979 TGCTTATGCTGACGAAAGAACCATCATTTGCATCGCTGCTGGTAAAACAAAGTCCGGCAA 4038 ||| |||||||| | ||||| ||||| || || ||||| || ||||| || || | | Sbjct 2024 TGCGTATGCTGAAAAGTGAACCGTCATTCGCGTCTCTGCTCGTTAAACATAGCCCCGGCA 1965 Query 4039 TGCACTACGGTCACGGCTGGATAATGGGTAAGGATGGTAAACGCTGGCATCCGTGCCGTT 4098 |||||||||| ||||||||||| |||||||| || || |||||||| ||| |||| | Sbjct 1964 TGCACTACGGCCACGGCTGGATCGCAGGTAAGGACGGCAATCGCTGGCACCCGAGCCGCT 1905 Query 4099 CACAAGATGAATTGCTGGCAGAACTATCAACGAAAAAACGGGGGAACAAATGGCTATTGA 4158 |||| | ||| |||||| | | || || || |||| | |||| | |||||||| || Sbjct 1904 CACAGGCTGATTTGCTGACTGGCCTCTCTACTCAAAAGCAGGGGGAATCATGGCTATCGA 1845 Query 4159 AGGCGCTGCGGCGACTGTTCCATTAAGCCCCGGCGAACGCCTGAATGGACTTAATCACAT 4218 || | | | ||||||||||| ||| | || ||||| ||| || || |||||| | Sbjct 1844 AGCTGTTTCCGCGACTGTTCCGCTAAAAGCGGGTGAACGTCTGGCCGGTCTCAATCACGT 1785 Query 4219 TGCGGAATTAAGGGCGAAAGTTTTTGGCCTTAATATTGAGTCAGAGCTTGAGCGGTTTAT 4278 || ||||| | |||| | || || | ||| | |||| ||||||| ||| | Sbjct 1784 GGCTGAATTGCGCGCGAGATATTGGGG---TGATAGCTGGAAAGAGGTTGAGCGCTTTGT 1728 Query 4279 TAAAGATATGCGTAATCCACGGGATAT-CAATAATGAACAAAATAAACGGGCACTGGCTG 4337 | |||||||| || ||| || |||| |||| ||||||| ||||| ||||| | Sbjct 1727 CGATGATATGCGCGATAAACGTGACCCACAATT-TGAAGAAAATAATCGGGCGCTGGCCG 1669 Query 4338 CCATATTCTTTATGGCAAAAATTCCAGCTGAACGTCAT-AGCATCAGCATTAA-TGAGCT 4395 | || |||||| |||||||||| || || | |||||| ||| || | ||||| |||||| Sbjct 1668 CTATTTTCTTTCTGGCAAAAATACCGGCGGCTCGTCATGAGC-TC-GAATTAAGTGAGCT 1611 Query 4396 GACCACTGATGAAAAGCGGGAGTTGATTAAAGCAATGAATCATTTTCGTGCAGTGGTGAG 4455 ||| ||||| || || | | | |||| ||| |||||||||||||||||||||||||| Sbjct 1610 GACTACTGACGAGAAAAAAGCGCTTATTACAGCGATGAATCATTTTCGTGCAGTGGTGAG 1551 Query 4456 CTTATTTCCAAGACGGCTAACCATGCCGAATTAACCAACTAATGAAATTAATGGCGTAAA 4515 ||||||||||| |||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 1550 CTTATTTCCAAAACGGCTAACCATGCCGAATTAATCAAAACAGAAATTTAATGGCGTAAA 1491 Query 4516 CCCGCCGGGCATCCCTTTATCTAAATTCAGGAGAATTGATTATGCGTAATATTGAAACCC 4575 |||||||| | || || | || |||||||| || ||||||||||||| ||||||| Sbjct 1490 CCCGCCGGACTTCTTATTGCCCGAAATCAGGAGAGTTAATTATGCGTAATACCGAAACCC 1431 Query 4576 TCACGACCAAAGCCGGACCGGATGACGCAGGGCTTAATATTTTACTGACAGAGGCTCGTC 4635 | || | | |||| ||| || | || || ||||| || || Sbjct 1430 GTTCTTTTAACACTGATAGTGATG-CGCTGGCCGTA-----TTGCTGACCGATGCAAAAA 1377 Query 4636 TGGAAGAACG------CCGGGCAAGGGCTGAAGCAATGGCAGCTCGCCTTGATAGCCTGG 4689 ||||| || ||| || |||| | || |||||||| |||| Sbjct 1376 AAGAAGAGCGTAAAGACCGTGCGCTCGCTGTTTCCAT------CCGCCTTGAGGCGCTGG 1323 Query 4690 CGTGTCATATCAC--ATCCCGCCAGCTAAACCACGTCGAAGCGGCAGAGCTGCTGCGTGT 4747 | |||||||| | | | | | | | |||||| || || |||||||| Sbjct 1322 CTATCCATATCACCAAAGAGGGTA--TGAGCGGCACCGAAGCTGCCGAACTGCTGCG--- 1268 Query 4748 GACTGCTGAAGCAATCC------AGAACGAAGCGCAGGAGATCCACTAATGGCTGATGCA 4801 |||| ||||| | || |||||||| | |||||| | |||||||||| || ||| Sbjct 1267 --CTGC-GAAGCCACCCGCTTTGAGAACGAATCACAGGAGCTGCACTAATGGCCGACGCA 1211 Query 4802 ATGGATCTCGTACAACAGCGCGTTGAAGAAGAACGTCAGCGTCATATCCGTGCTGCCCG- 4860 |||||| | | ||||||||| | | ||||| || ||||||||||| | ||| || Sbjct 1210 ATGGATTTAGCACAACAGCGTGAGCAGGAAGACCGCGAGCGTCATATCAGCATTGCACGC 1151 Query 4861 TGCCAAAACGCCGGGCGTGTCCCGCGTGCTTTGCATTGAGTGTGAAGCACCAATTCCGCC 4920 ||| | ||| | | | ||||| | |||||| || ||||| | ||||| ||| Sbjct 1150 AGCCGTATCGCTGCACCT-TCCCGTTTTCTTTGCGAGGAATGTGACACCCCAATCCCGGA 1092 Query 4921 AGCACGACGCCGCGCCATTCCGGGTGTGCAGCTTTGCATTACTTGCCAAGAAATCGCAGA 4980 || || || || |||||||||||| ||||||| || ||||| |||||| ||| Sbjct 1091 GGCTCGCCGTATTGCGATTCCGGGTGTGGCCTTTTGCATGACCTGCCAGCAAATCGAAGA 1032 Query 4981 GCTGAAAGGCAAACATTACAACGGAGGTG 5009 || ||| |||||||||| |||||| Sbjct 1031 ACTCAAATCAAAACATTACA---GAGGTG 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109045344673486