Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1155 652 0.0 seq4770 93.3 8e-15 >seq1155 Length=6594 Score = 652 bits (722), Expect = 0.0 Identities = 1060/1502 (71%), Gaps = 43/1502 (3%) Strand=Plus/Plus Query 17541 TGCGCCAATTCCGCTAATCGCATCAACAGTGGAGGCCATTGCAGGATTTGACTGAATACG 17600 ||||||||| ||||| || | ||| || | | ||| || ||||| | ||| | ||| Sbjct 2045 TGCGCCAATACCGCTCATGGTATCGACCACGCTCGACATAGCGGGATTAGTCTGCAGACG 2104 Query 17601 CGCCTGGACAGCCAGCGCAGCCAATGTGAGACAG-CGAATGCCGTTATTGACGTTCTGCA 17659 ||| || | |||||||| | ||| | | ||| |||||||| ||| ||| | | | Sbjct 2105 CGCATGCAACGCCAGCGCCGACAACGACA-ACATACGAATGCCAGCATTAACGCTTTCAA 2163 Query 17660 ACAGACCGCGCTTGCAGTTATGGGTCAGTTGAACGCCAGGCAAAGCGCCTGCT-GCAAGC 17718 || | |||| | | | |||||| | | ||| | || || ||| || ||| Sbjct 2164 TCATGTTGTGCTTACGGGCAGAGGTCAGGCGTTCATCAGATACCGCACC-GCTCGCCAGC 2222 Query 17719 TGCCCAATTTCGGCTGTTGCTTTCATCACGTAATGCGGCAGCTTTTCTTTAGCCATCTCG 17778 | || | ||| |||| ||| || ||| | ||| || |||||||||| ||| Sbjct 2223 TCGCCGAGTTCACGCATTGCGCGCATGACATAAGACTGCAATTTGTCTTTAGCCAGCTCA 2282 Query 17779 TTAACAGGTACGCAGGGCAGGCATTGTAATTGTGCCAGCGCGCCGTCAATCAGCGTTGGG 17838 ||||| ||||| || |||||||| || | || ||||| || |||| || |||| | Sbjct 2283 TTAACCGGTACACATGGCAGGCAATGAATCTGCGCCAGAAAACCATCAACGAGGGTTGAG 2342 Query 17839 TCTTCGGTTAGATCGGTCAGGGTTAGCATC---TCAG-CGACAGTAAGCTGATGAACCTG 17894 |||||||| || || ||||| |||| | |||| || | || | ||| ||| ||| Sbjct 2343 TCTTCGGTCAGGTCAGTCAG---TAGCCACAATTCAGGCGGC-GTGAACTGGTGAGGCTG 2398 Query 17895 CTCCGGGTTGAGCTTGTTGCGAAGTGTCTGCACTTTCATACCAGCCCGTTGTGCCAGCAC 17954 ||||||||||||||||| || | || || || ||||| || || || | ||||||| Sbjct 2399 TTCCGGGTTGAGCTTGTTACGTAACGTTTGAACGTTCATGCCCGCACGCTCTGCCAGCTT 2458 Query 17955 ATTCATGTTGTGCGTGAGCGCAAACTTGCGACAGGCGCTTTCAAAGTGTTGTTGGGTGGT 18014 ||||||||| ||||||| || || || ||| |||| | || ||| Sbjct 2459 CGCCATGTTGTGACGCTGCGCAAAAGCCCGGCATGCTTCGTCATAGTGGGGATGTTTGGA 2518 Query 18015 AATCTGAAAATCAAACATGTGCGAATCTCCTT---ATTCACTTAATGTGAATTAACCACC 18071 || ||||||||||||||||| | ||||| |||||| ||| ||||||||| | || Sbjct 2519 AACCTGAAAATCAAACATGTTGCA---TCCTTACAATTCACATAAAGTGAATTAAGCGCC 2575 Query 18072 GATAATGAGCTGAAAACGAGAATGCCCCAACGCTTTGCGCAACTGCTCTTCTTTCCAGCG 18131 ||| | ||| |||||||| ||||| |||||||| || |||||||| |||||||||||||| Sbjct 2576 GATGACGAGTTGAAAACGGGAATGACCCAACGCCTTACGCAACTGTTCTTCTTTCCAGCG 2635 Query 18132 AGCGTAATAAATTCGAATCGGGCTGCCAGCTTTAGAGCAGCCTTTAGGGATGGTGCGGGT 18191 ||||||||||| |||||||||| || ||||| |||||||||| |||||||||||| Sbjct 2636 TGCGTAATAAATACGAATCGGGCCACCTGCTTTCTTGCAGCCTTTACGGATGGTGCGGGG 2695 Query 18192 TTCGATTGGTAATTTGGGGTTGTCTCCAGTCGTCCAGCGGTAAACTGTGCGAACAGAGAC 18251 ||||||||||| |||||||| ||||| ||||||||||| | ||||| |||| || Sbjct 2696 TTCGATTGGTACGCAAGGGTTGTCGCCAGTTGTCCAGCGGTAGGCGGTGCGTTCAGAAAC 2755 Query 18252 ACCCTCTAACTTGGCGAACT-CTTTAGTAGTAACAATCGGCGCGGGAACCGTGAAGATTG 18310 ||||||||||| ||||||| || || ||| || || || || || || ||| ||||| Sbjct 2756 ACCCTCTAACTCTGCGAACTGCTGCAG-AGTCACTATAGGTGCAGGCACTTTGAGGATTG 2814 Query 18311 CGATTTCAGAAGCCATATAGCATCATTCCTCTTTTG-GGGTTT------GTG---ACAT- 18359 |||||||||||||||| | |||| ||||| |||| | |||| ||| |||| Sbjct 2815 CGATTTCAGAAGCCATGTTGCATGGTTCCTTATTTGAGAGTTTTAGACAGTGAGCACATA 2874 Query 18360 -TGTTTGCCAAAGTCTTGCCA-TCATTTGCCACCGTTAACAGCGATATTAATATTATTTT 18417 | |||||| | || |||||| ||| |||||||||| ||| ||||| ||||| || ||| Sbjct 2875 GTTTTTGCCGACGT-TTGCCACTCA-CTGCCACCGTTTACAACGATACTAATACTAATTT 2932 Query 18418 TAATATCACGCAACTAAGGAATATTAACTTTAATGTTGGATGCTAATTTTGATAACTCGG 18477 || ||||| |||| ||||| ||| ||||||| | || || |||||| ||||| || Sbjct 2933 TAGTATCAATCAACACTGGAATGCTAATTTTAATGATAGAAGCCAATTTTAATAACGAGG 2992 Query 18478 CGTTACTAAATCGGATTTGCGAGGTTTATGGTTTTACTCAGAAAATTCAACTAGCTAACC 18537 ||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| || || | Sbjct 2993 CGTTACTAAATAGGATTTGCGAGGTTTATGGGTTTACACAGAAAATCCAACTCGCCAATC 3052 Query 18538 ACTTTAAAATCGCCGCCAGTTCCTTACAAAACCGCTATACGCGCGGCAATCTGTCTTATG 18597 |||| || ||||| || ||||||||||| |||||||||||||| ||||| |||| || | Sbjct 3053 ACTTCAAGATCGCAGCGAGTTCCTTACAGAACCGCTATACGCGGGGCAACATGTCGTACG 3112 Query 18598 ACCTTGCAGTACTCTGCGCCCTTGAAACCGGCGCTGATATCAAGTGGCTTATGACTGGCG 18657 | |||| || | ||||| || ||||| || | | || ||||| |||||||| | Sbjct 3113 ATTTTGCGGTGCATTGCGCACTAGAAACTGGTGTAAGCCTTAAATGGCTAATGACTGGAG 3172 Query 18658 AAGGTAAGAGGGGTCATTCATCTGAAGAATCCAACACCTTAGCTCAACTCAACAAGTTCA 18717 | || | | | ||| ||| | || ||| | | || ||| Sbjct 3173 AGGGAGACAAAAACCTCTCAGTTGATGCCCCCGCGTCCTCAATCGAGCTTTCGCTATTCG 3232 Query 18718 CTTTAAGTGAAGGCAGACTTACTGAA-GTTGGTATTTTGCATATCGATTATGGGTTGTTT 18776 ||||||||||| ||| || | || |||| | | | |||| || ||| || Sbjct 3233 AATTAAGTGAAGG-AGAACTAGTCAATATTGGAACTCTCTTGTTCGACCATCAGTTTTTC 3291 Query 18777 GGGAGGCTGTTAAAAAACGCTTTATGCGTCATGAGCGAAAGTAAAAGC---TATATCGTA 18833 | | || | |||| | | || || | || || ||| ||| ||| || | Sbjct 3292 GCTAAGCAGCCCAAAAGAGGCTGCTGTGTGAAAAGTGA---TAACAGCACTTATGTCATC 3348 Query 18834 GAGAAAGAGGCATCGCTAGCGGACGGCTTGTGGCTTGTTGATGTAGAAAGCTCGGTTAGC 18893 ||| | || || | | | |||||| | ||| | || ||| | ||| || | ||||| Sbjct 3349 GAGCAGGAATCACCTTTGTCTGACGGCCTTTGGTTAGTCGATATTGAAGGCGCAATTAGC 3408 Query 18894 CTCAGAGAACTAACCGTTCTTCCAGGCAAAAAGCTTCATGTTGCAGGCGGTAAAATTGCC 18953 |||||||||||||| || || || || |||| | ||||| |||||||| || || | Sbjct 3409 CTCAGAGAACTAACGGTACTGCCCGGTAAAAGATTGCATGTCGCAGGCGGCAAGGTTCCT 3468 Query 18954 TTTGAGTGCAGCATGGATGAGATCAAGATGCTGGGTCGCGTTATTGGTGTTTACAGTGAG 19013 ||||| ||| |||| ||||| || || | ||| ||||| || | ||||| ||||| ||| Sbjct 3469 TTTGAATGCGGCATTGATGATATTAAAACGCTTGGTCGAGTGGTGGGTGTATACAGCGAG 3528 Query 19014 GT 19015 || Sbjct 3529 GT 3530 Score = 141 bits (156), Expect = 2e-29 Identities = 233/328 (71%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 16605 TCCTCCTGCACGCGCTCTTGTACGCGATCCATTGAGTCGCCCATTAGTGCAGCTCCTGCG 16664 || |||||| | |||| |||| | |||||||| |||| |||||||||||||||||| | Sbjct 1179 TCTTCCTGCTCACGCTGTTGTGCTAAATCCATTGCGTCGGCCATTAGTGCAGCTCCTGTG 1238 Query 16665 ATTCGCTTTCATAACGTGTAGCTTCCTGGCGGATAAGCTCTGCTGCCTCAATGCCGTTCA 16724 ||||| | ||| | || || ||||| ||| | || || || || || ||||| ||| Sbjct 1239 ATTCGTTCTCAAAGCGGGTGGCTTCGCAGCGCAGCAGTTCGGCAGCTTCGGTGCCGCTCA 1298 Query 16725 GCCCCT-TCTGATGGATATGTAAAGCCAGAGCAACCAGCCGCTCAGAAAC-GCGCAGCGC 16782 |||| | || | |||||| | |||||| || | || || ||||| ||| ||||| Sbjct 1299 TACCCTCTTTGGT-GATATGGATAGCCAGCGCCTCAAGGCGGATGGAAACAGCG-AGCGC 1356 Query 16783 GCGCTCTTTACGTTCCTCGTTACGGGCCTTATTGAGCAGCGCCACCATTGCGTCGGTGTC 16842 || |||||||| || || || || | | |||| | ||| || || | || Sbjct 1357 ACGGTCTTTACGCTCTTCTTTTTTTGCATCGGTCAGCAATACGGCCAGCGCATCACTATC 1416 Query 16843 AGCTTCAAAATTGCGGGTTTCAATATTTCGCATTTCTCTTTCTCCATATTTCGGGCAA-A 16901 || | |||| |||||||| |||| ||||| | ||||| ||||||||||| | Sbjct 1417 AGTGTTAAAAGAACGGGTTTCGGTATTACGCATAATTAACTCTCCTGATTTCGGGCAATA 1476 Query 16902 AGAATGCCCGGCGGGTTTACGCCTTTAA 16929 |||| | |||||||||||||||| |||| Sbjct 1477 AGAA-GTCCGGCGGGTTTACGCCATTAA 1503 >seq4770 Length=1577 Score = 93.3 bits (102), Expect = 8e-15 Identities = 84/105 (80%), Gaps = 8/105 (8%) Strand=Plus/Plus Query 20079 TATGTCATTGAAAATAAACGCAAGTTATTGTTTTTCTGTTGCT----TATCAAATTTCTC 20134 ||| ||| ||| || ||| ||| ||||| ||||| |||| | || || ||| Sbjct 1463 TATATCAATGATAAATAACACAAACTATTGATTTTCGGTTGTTCCGATAGGAA----CTC 1518 Query 20135 ATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGAT 20179 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1519 ATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGAT 1563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94476740715084