Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2083 190 1e-42 seq4769 123 2e-22 seq567 123 2e-22 seq5379 107 1e-17 seq4235 87.8 1e-11 >seq2083 Length=454743 Score = 190 bits (210), Expect = 1e-42 Identities = 379/554 (68%), Gaps = 8/554 (1%) Strand=Plus/Minus Query 474327 TTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386 |||| |||| || ||||| |||||||| ||| |||||| | || | ||| | || | Sbjct 104327 TTGCTGTTGGAATAGATTTGGGAACTACCTACTCTTGTGTTGGAGTCTTTCAACACGGAA 104268 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 |||| ||||| ||||| || || || || || ||||| || || || || || || || | Sbjct 104267 AAGTCGAAATCATTGCTAACGATCAGGGGAACAGAACTACCCCTTCGTACGTATCCTTCA 104208 Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 | || |||| | |||| ||||||| || || | | |||| ||| ||||| | | Sbjct 104207 CGGATGTTGAAAAAATTATCGGAGATGTAGCAAAGGACAACGCTGGATCCAATCCGGAGA 104148 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 |||| | ||||| || || || ||||||||||| ||| || ||| | || ||| Sbjct 104147 ATACGGTCTTTGACGCCAAGAGGCTGATTGGTCGTCGTTTCGACGATGAGTCAGTTCAAG 104088 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAA 474625 | |||||| || ||||| || |||| || ||| | || || || || || Sbjct 104087 CGGATATGAAGCACTGGCCCTTCCAGGTCATCAATAAGGAGGGAAAGCCCGTCATCCGAG 104028 Query 474626 GCA-ATACACGCAGGTGAAACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGGTTT 474683 || ||| | | || |||| ||||| | || ||| | |||||| | ||||| | Sbjct 104027 TCAGTTACCTTAAAG---AAGTAAAAGATTTTACCCCCGAAGAGATTTCTGCTATGGTGT 103971 Query 474684 TAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | ||| ||||| | || | |||| | | ||||||| |||||| || || || Sbjct 103970 TGGGCAAGATGAAGGAGACAGCCGAG-GCCTTTCTTGGATGTACAGTAACCGAGGCCGTC 103912 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 |||| |||||||| ||||| |||||||||||| | || |||||||| || || | | Sbjct 103911 GTTACCGTTCCAGCCTATTTCAATGATTCTCAAAGACAGGCAACTAAGGACGCTGCCACC 103852 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || | |||||||||| ||| | || || || || || || || || || |||| || Sbjct 103851 ATCTCTGGTCTTAATGCATTAAGAATCATCAACGAGCCGACCGCTGCAGCTATTGCATAC 103792 Query 474863 GGTCTTGATAAGAA 474876 ||| | |||||||| Sbjct 103791 GGTTTGGATAAGAA 103778 Score = 165 bits (182), Expect = 5e-35 Identities = 524/801 (65%), Gaps = 20/801 (2%) Strand=Plus/Minus Query 475382 CATCTTGGTGGTGAAGATTTTGATAATAGACTTGTA--TCATGGTGTGTTGAAGATTTCA 475439 ||| | ||||| ||||| ||||| || | | || |||| | || ||| || || | Sbjct 103656 CATTTGGGTGGAGAAGACTTTGACAACATCATGGTTGCTCAT--TTTGCTGAGGAGTTTA 103599 Query 475440 AGAGGAAAAATAAAGTTGATCTTTCAAC--ATCTGCTAAAGCATTAAGACGTCTTAGAAC 475497 |||||||| ||||| ||| | |||| || || | || | ||| | | |||| Sbjct 103598 AGAGGAAACATAAAAAGGATATGACAACCAATAAGCGAT--CAATGAGAAGATTGCGAAC 103541 Query 475498 TGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGA 475557 || ||||| || |||||||| ||||||| | ||| | | | || ||| |||| Sbjct 103540 TGTCTGTGAGCGGGCTAAGCGGACTCTTTCAACAAGTACCAATGCGAGCGTCGAAATTGA 103481 Query 475558 TTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATAT 475617 |||||| ||||| || ||||| || | ||||| || || || |||||||| | Sbjct 103480 TTCTCTCTTTGACGGCATTGACCTCTATTCAAGCATTACCAGAGCCAAGTTTGAAGAATT 103421 Query 475618 TTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAA 475677 ||||| | ||||| || ||||| | | || ||||| ||| |||| ||| | || Sbjct 103420 GTGTTCAGCCCTCTTCAGGAAAACTCTGGGTCCAGTTGATAAAGCTCTCGTTGATGCCAA 103361 Query 475678 ACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAA 475737 | ||||| | | | || ||||| | || || || || || |||| ||||| Sbjct 103360 GATGGACAAGACTGCCATTGACCAAGTTGTTTTGGTTGGTGGGTCTACTCGAATACCAAA 103301 Query 475738 AATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAG--TTAAATGAAAGTGTAAAT 475795 || | |||| || ||| ||| | || || | || | | || Sbjct 103300 GATTCAAAGTTTGCTAAAGGACTACTTTGGTGGAATGGAGCCTTGTAAGACAATC--AAC 103243 Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCA 475855 |||||||| || || |||||||| ||||| || ||||||||||| | ||| || Sbjct 103242 CCTGATGAGGCCGTAGCATATGGGGCTGCCGTTCAAGCAGCTATCCTGAAGGGTGAA--- 103186 Query 475856 GACGAGAA-ACTAAATAATATTGTACT--TG-TTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| | |||| ||| ||| || || |||| || || || || ||||| ||| | Sbjct 103185 GACCACTCCACTAT-TAAGGATGTCCTCTTGCTTGATGTTACCCCTCTATCATTGGGTAT 103127 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||||| | ||| || | ||||| | |||| ||||||| | ||||||| || Sbjct 103126 CGAAACGGCTGGTGGTGTGATGACCGTTATTATACCCAGAAATTCCACTATCCCCGTTAA 103067 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 ||| | || |||||| |||||| |||| || || | || || || || | Sbjct 103066 GAAAACTCAAACATTTTCTACTTATGCTGACAACCAGCCTGGAGTCCTTATTCAGATATA 103007 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||| || ||| | | || | |||||||||| ||||| | ||| ||||| || Sbjct 103006 TGAGGGCGAACGTGCCATGACGAGAGATAATAACTTGCTTGGTAAGTTTGATCTTTTGGG 102947 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||| |||| ||||| | || ||||| |||||||| |||| |||||| ||||||| || Sbjct 102946 GATTTCTCCCGCTCCTCGTGGTGTTCCCCAAATTGAGGTTAGCTTTGATCTTGATGCTAA 102887 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||||||||| ||||||| || Sbjct 102886 TGGTATTCTGGATGTTACCGC 102866 >seq4769 Length=216924 Score = 123 bits (136), Expect = 2e-22 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATC-TTGGACAAGAAGTAACTGATG 474737 ||||| || |||||||| |||||| ||| | || | |||||| || | | ||| Sbjct 157236 GTTTTGGCAAAAATGAAGGAAACCGTCGA--TAATTACGTTGGACTTAAAATCAAGAATG 157179 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| || |||||||| || ||||| || ||||||||||| ||||| || |||||||| | Sbjct 157178 CAGTCATCACTGTTCCTGCCTATTTCAACGATTCTCAACGACAAGCTACGAAAGATGCTG 157119 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | ||| || |||||||| || | || || || || || |||||||| |||||| | | Sbjct 157118 GTTCAATCGCTGGTCTTAACGTGGTTCGAATCATCAACGAGCCAACAGCGGCCGCATTGG 157059 Query 474858 CTTATGGTCTTGAT 474871 | ||||||||| || Sbjct 157058 CATATGGTCTTAAT 157045 >seq567 Length=338301 Score = 123 bits (136), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| ||| ||||| | | |||||||||||||||||| |||||||| || | || Sbjct 137743 TTATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGC 137802 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||||||||||||||| || ||||| ||||||| |||| || ||| Sbjct 137803 TGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCA 137862 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || || || || |||||||| ||||| || || ||||||||||| Sbjct 137863 TTGGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTG 137918 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| ||| ||||| | | |||||||||||||||||| |||||||| || | || Sbjct 137059 TTATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGC 137118 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||||||||||||||| || ||||| || |||| |||| || ||| Sbjct 137119 TGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCA 137178 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || || || || |||||||| ||||| || || ||||||||||| Sbjct 137179 TTGGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTG 137234 Score = 109 bits (120), Expect = 4e-18 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTA-GAG 480609 |||||| | | || | |||||||||| |||||| | ||||||||| |||| | | Sbjct 136083 ACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATC-GCTAAGCG 136141 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | ||| || | |||||| || |||||||| || | |||||||| |||||||||| Sbjct 136142 TACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTC 136201 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG--TGAAGTTTC 480727 ||||||||||||| ||||| || |||| |||| || || || || | | || Sbjct 136202 CTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTC-GTTTGGCTCCA-CATC 136259 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| |||||||| || || || |||||||| Sbjct 136260 CAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTG 136301 Score = 104 bits (114), Expect = 2e-16 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 |||||| ||| ||||| | | |||||||| ||||| || |||||||| || | || Sbjct 136353 ATTATAGTCACTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTG 136412 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| |||||||||||||| ||||||||||| || |||| |||| || || Sbjct 136413 TTGATCAGGGGGAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTCTCAACAGAGTC 136472 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || ||||| || |||||||| | || || |||||||| || Sbjct 136473 GTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTG 136529 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | ||| || || |||||||| || | |||||||||||||||||||||||||| Sbjct 137310 ATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTT 137369 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| || || || |||| || | || |||| || | | |||||||| || Sbjct 137370 GTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGAT 137429 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| || ||||| Sbjct 137430 CGTTTTGCCAGTAAGTGTTTTAACAAAGATTTG 137462 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| || ||||| || ||||| || | |||||||| || |||||||||||||| Sbjct 137538 ATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTT 137597 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| ||| || | |||| || || || | || || ||||| Sbjct 137598 GTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAAT 137657 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| | || || |||||||| || Sbjct 137658 TGTCTTACCGGTTAAGGTTTTCACGAAAATCTG 137690 >seq5379 Length=632234 Score = 107 bits (118), Expect = 1e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 ||||||||||| || ||||| || || || |||||| |||| || | |||||||| || Sbjct 181731 GATTTTTCATCGCCTAATATAGCCAAAGAGATGCATGTTGGTCATCTAAGATCTACGATT 181672 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 || || || || ||||||| || | || || |||| || || ||| ||| | Sbjct 181671 ATAGGAGAGTCAATTTGTAGGATTTTCGAGTTCGTGGGATTCGACGTCGTGAGAGTAAGT 181612 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCATA 817263 |||||||| |||||||| || || ||||| |||||||| ||||| Sbjct 181611 CATATTGGAGATTGGGGGACTCAGTTTGGGATGTTAATAGCATA 181568 >seq4235 Length=41994 Score = 87.8 bits (96), Expect = 1e-11 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 318667 TGAATCAATTTATCATTAGCATTTCTTACAGTACCATCATATTCCACTTTAATA-TCTTC 318725 ||||| || || ||| | ||||| ||||| |||||||| | || ||||| ||| | Sbjct 30106 TGAATTAAGTTGCGATTCGAGTTTCTAACAGTTCCATCATAGTGAACCATAATACTCTCC 30165 Query 318726 TAGTATTTTAACTAATTTTCTTTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATT 318785 | ||||| | || | ||| | |||||| || |||| ||||||||||| |||| Sbjct 30166 ATGGCTTTTATC-AACCGACGTTGGATATAACCAGTTTCTGAGGTTTTAATAGCTGTATC 30224 Query 318786 AATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAGAATTC 318827 |||| |||||||| ||| ||||| | ||||||||||| || Sbjct 30225 GATAACACCTTCTCGTCCACCCATAGCATGGAAAAAGAACTC 30266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267932254337036