Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq567 140 6e-28 seq3622 95.1 2e-14 >seq567 Length=338301 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || | ||||| ||||| ||| |||||||| Sbjct 137236 ATACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATC- 137294 Query 192367 GATAA-TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| ||| || |||| ||||||||||| || ||||| || | ||||||||||||||| Sbjct 137295 GCTAAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGG 137354 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| |||||| |||||| | | |||||| | || Sbjct 137355 AGGAATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTC 137414 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| ||||| | |||||||| ||| || ||||| Sbjct 137415 AACATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| | ||| |||||||| | |||| ||||| |||||||||||| | | Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATC-GCT 136136 Query 192370 AA-TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| || || ||||| || | |||||||||||| || || Sbjct 136137 AAGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGG 136196 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || ||| || ||| | | ||| || | || || Sbjct 136197 AATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCAC 136256 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || || | |||||| | ||| || ||||| Sbjct 136257 ATCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 |||||||| || | || ||| | |||| || | ||||| || || ||||||||| || Sbjct 136303 ATACCACCCCTCA-ACCTAAGAACTAAGTGGAGAGTAGATTCCTTCTGGATATTATAGTC 136361 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || | || || | || ||||| ||||| || | ||||||||||||||| Sbjct 136362 ACTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTGTTGATCAGG 136421 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| |||||||| || ||| || ||| | | ||| || | || Sbjct 136422 GGGAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTCTCAACAGAGTCGTTGGGCTC 136481 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || |||||||| || ||||| ||||| ||||| | || ||||||||| Sbjct 136482 CACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 136533 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 |||||||| || | || ||| | | || || | ||| | || || |||||| ||||| Sbjct 137464 ATACCACCCCTCA-ACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATC 137522 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || || |||| || | ||||| || || || || | |||||||||||| || Sbjct 137523 GCTTAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGG 137582 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| || ||| |||||| | | ||| || | || Sbjct 137583 GGGAATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTC 137642 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || |||||||| || ||||| ||||| ||||| | || ||||||||| Sbjct 137643 CACATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | || | || || || | ||||| ||||| ||||||||| || Sbjct 137920 ATCCCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTC- 137978 Query 192367 GATAAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| || || |||| || | ||| || || || || || | ||||||||| || || Sbjct 137979 GTTAAGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGG 138038 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || ||| ||| || | | ||||| | || Sbjct 138039 CGGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTC 138098 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| || ||||| ||||| || || || | |||||||||||| Sbjct 138099 TACATCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||| || || || || | |||||||||||| || || |||||||| || ||||| || Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 ||| |||||| | | ||| || | || || || |||||||| || ||||| Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 192511 GTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| | || ||||||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCATT 137010 >seq3622 Length=296610 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || || ||||| ||||||||||| | ||||| ||||| || | ||||||||| || Sbjct 278334 ATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAGTTCATTACTGAAG 278275 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 | || || |||||||| || | |||||| | |||||| || | ||||| || |||| Sbjct 278274 GCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGCAAATGAACCAGAA 278215 Query 49938 AAGAATATACCCTCGACACACGCAAATGC 49966 ||||| || || |||||| | ||||| || Sbjct 278214 AAGAAAATTCCTTCGACAGA-GCAAAGGC 278187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984407383216950