Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq264 792 0.0 seq4128 123 5e-24 >seq264 Length=5517 Score = 792 bits (878), Expect = 0.0 Identities = 774/986 (78%), Gaps = 21/986 (2%) Strand=Plus/Minus Query 28768 TTTCAGTGCTGGCGGGGTTGAACAACGAGCCCCGCGAGGCGTTAGCTGGTTACCAGATTG 28827 ||||||| |||| | |||| ||||||| |||| ||||||||||||||||||| Sbjct 1262 TTTCAGTACTGGACAGACTGAAAAACGAGCGTGATGAGGTGTTAGCTGGTTACCAGATTT 1203 Query 28828 ACACCGAGGGAAAGCAGGTTTGTCACCGCACCGGCAATTACACCCGGCGTCCCGTCTTTC 28887 | ||| ||| | || ||||||||||| |||||||| || |||||||||||||||||| Sbjct 1202 AAACCAAGGCTCAACAAATTTGTCACCGCTCCGGCAATAACTCCCGGCGTCCCGTCTTTC 1143 Query 28888 ACCGCACTGATAATCTTATCGCCCATCGTTTCATTTCCGCCTAGTGCCTCAGGTTTTTTG 28947 |||||||||||||| ||||| |||||||||||||| || | || ||||| | |||||| Sbjct 1142 ACCGCACTGATAATTTTATCACCCATCGTTTCATTACCATCAAGCGCCTCGAGATTTTTG 1083 Query 28948 TTGAGCACGGCGAGCGCTTTCTCGGTCAGGCGCGCATTCCGAAAATGGGTCTGATGGTCT 29007 |||||||||| ||| |||||||||||||| ||| | | | ||||| || || |||||| Sbjct 1082 TTGAGCACGGTGAGTGCTTTCTCGGTCAGACGCACGTCCATAAAATATGTTTGGTGGTCT 1023 Query 29008 GTTTCATACTGGATGTAGCCGTTTTCATTAAGAAAAGTGAATGTACCCTCAACCACACTA 29067 |||||||||||||| || || |||||| |||||||||||||||||| |||||||||||| Sbjct 1022 GTTTCATACTGGATATATCCATTTTCACCAAGAAAAGTGAATGTACCTTCAACCACACTA 963 Query 29068 CGCAACTGATTCAGTGCTTTCATTTCTGGTGAGTTAAGTTGGTCAAAGTAGTCATCAGGT 29127 ||||| ||||| | |||||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 962 CGCAATTGATTTAATGCTTTCATTTCCGGTGAGTTAAGTTGGTTGAAGTAGTCATCGGGT 903 Query 29128 AGCGCGGCGTTAAATTTTTCGTAGGTAATGACCTGTGGCACCGGGAAGTTATCCCATAGC 29187 || || |||||||| ||||||||||| ||||||||||| || || || || ||||||| | Sbjct 902 AGTGCAGCGTTAAACTTTTCGTAGGTGATGACCTGTGGGACTGGAAAATTCTCCCATAAC 843 Query 29188 ACCGCAAAGATTTCCGCCGTCTGCTGGTTAAATAATTCGAGGTTTTTGGACATGCATAAT 29247 ||||||||||| |||||||||||||||||||| || ||||||||||| | |||||| ||| Sbjct 842 ACCGCAAAGATCTCCGCCGTCTGCTGGTTAAACAAATCGAGGTTTTTAGGCATGCAAAAT 783 Query 29248 TCCCTTTC-ATCAATAG--ACCCGTTTGCCGATTGGGC-AAAAAAGCTGACTGTAATGGC 29303 ||| |||| | | | | |||| |||| | ||| | | | |||| | || Sbjct 782 TCCATTTCTAGTGAGGGTAAGTGGTTTAAGCGTTGGTCGAAACACGTTATCTGT-CTTGC 724 Query 29304 TTTAAATAACGACCTCAGTTCTCGCGAGGTTGAAAGCTACGCCGCAAAAATGGTCGAGCA 29363 ||| || ||||| ||||| || ||||| || | |||| ||| || ||||||| || Sbjct 723 ACAAAACAATGACCTTAGTTCACGGGAGGTCGACACCTACACCGACAAGCTGGTCGAACA 664 Query 29364 AGCCAGTAAAGATGAGCTTACGG--TCGTTATAAAACACCTGTTAAACCACATCAGAATG 29421 || || | | ||||| ||| | || || ||| |||| |||| ||||| |||||| Sbjct 663 GGCGAGCAGCGCAGAGCT--CGGAATAGTCATTAAAGACCTACTAAATCACATAAGAATG 606 Query 29422 CACAAATAAAAGGATCTATATCAATATGTTATCTCTCGTTTATGAAAATCCGTGGACGAC 29481 || |||||||||||||| |||||||||||||||||| |||||||||| ||||||| | || Sbjct 605 CAAAAATAAAAGGATCTTTATCAATATGTTATCTCTTGTTTATGAAAGTCCGTGGGCAAC 546 Query 29482 AATTTTTCTGCTGATTGTTGCCAGCATGTGCCTCAACAGTGTTATTGGCACATTGCGCGG 29541 ||||||| || ||||| ||||||||||| ||| |||| ||||| |||||| ||| || Sbjct 545 TGTTTTTCTACTAATTGTGTCCAGCATGTGCTTCAGCAGTATTATTTGCACATAGCGTGG 486 Query 29542 CCAGTAATCGCGACAAAACCCGACCCAAACCGGCACCCTGAATGCCGGttttttatgcca 29601 ||||| | | ||| || |||||| ||||||||||||||||||||||||||||| ||| Sbjct 485 CCAGTGA-CTTCACAGAA-GCGACCCTAACCGGCACCCTGAATGCCGGTTTTTTATACCA 428 Query 29602 tttttccgcgaatttcccgttttttAGCCGTGCATGCAACAGGTGCATTGTTTTGCATGC 29661 ||| | || | ||| |||||| |||| | |||||||| | |||||| || |||||| Sbjct 427 TTTCCCTGCAATTTTTCCGTTTCTTAGTCCTGCATGCATTAAGTGCATCATTCTGCATG- 369 Query 29662 GTCTGGCTTGCCCGTTC-----TGGCCGTTCGCCGCCAGAGCTGGCGCGCCTCCGGCGTG 29716 | ||| ||| || | | || |||||||||||||||||| | |||| | Sbjct 368 --CAAACTTTCCC--TCAAAATTTGACGATCGCCGCCAGAGCTGGCGTGGATCCGATGAT 313 Query 29717 TTCGTGCACCTGCATTAAAACCGACC 29742 | ||| |||||||||| |||||| Sbjct 312 CTGTTGCTCCTGCATTAATTCCGACC 287 >seq4128 Length=11080 Score = 123 bits (136), Expect = 5e-24 Identities = 108/132 (82%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 22358 CTCAAATGCTAGTGCTTCAGCTTTTCTT-TCGAATTTCCTGCGGATGCGTTTTCCGTCGC 22416 ||| || ||| |||||| |||||||| || || ||||||||||| || ||||| | || Sbjct 1610 CTCGAAAGCTGCCGCTTCA-CTTTTCTTATCAAACTTCCTGCGGATACGCTTTCCATTGC 1668 Query 22417 GACCGCGAGGTCTAATGTCCACTTCATAGCGACCATCATCGAGCTTCTTAATTGCCATAA 22476 |||| ||| || ||||||||| |||| |||||||||||||| |||||||| | ||||| Sbjct 1669 GACCAGCAGGCCTGATGTCCACTCCATATCGACCATCATCGAGTTTCTTAATAGTCATAA 1728 Query 22477 GAAAGCCCTCCG 22488 |||| ||||||| Sbjct 1729 GAAAACCCTCCG 1740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95046301774736