Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq567 141 8e-29 seq4076 113 4e-20 >seq567 Length=338301 Score = 141 bits (156), Expect = 8e-29 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || || || ||||| || || || || || || ||| Sbjct 137465 ATGCAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAAT 137406 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | || || || ||||| || ||||||||||| |||||||| ||||| |||||| Sbjct 137405 GATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAA 137346 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||| |||||||||||||| |||||||| ||| | || | | ||||||| Sbjct 137345 CAGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCG-CACACTTAGC-GATTATA 137288 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || || ||||| || || |||||||| | |||||| | || || Sbjct 137287 ACATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGG 137239 Score = 120 bits (132), Expect = 3e-22 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| ||||| || || || || || || | | | Sbjct 136304 ATGCAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAAC 136245 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | || || || || || |||||||||||||| |||||||| |||||||||||| Sbjct 136244 GACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAA 136185 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||| ||||| ||||| || |||||||| ||| | | | | ||||||| Sbjct 136184 CAGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCG-TACGCTTAGC-GATTATA 136127 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 | || || || ||||| ||||| || || || || Sbjct 136126 ATATCCAGAAAGAATCTACACTTCATTTAGTTTT 136093 >seq4076 Length=468004 Score = 113 bits (124), Expect = 4e-20 Identities = 437/677 (65%), Gaps = 21/677 (3%) Strand=Plus/Minus Query 139093 TTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTA 139152 |||||||| || ||| | ||| ||||||||||||||||| |||| || | |||||| Sbjct 421692 TTGCACACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTT 421633 Query 139153 CACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGC 139212 | ||||| || | || | ||| || ||||| ||| || ||||||||||| | Sbjct 421632 GATTTGATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACA 421573 Query 139213 ATATACGGTGTGCCAGTTTCCACTTGTGTCTCTA-TAATGAATTTGAACAA--GTCCCTA 139269 ||| | ||| || ||||| | ||| | || | || ||| |||| | || | Sbjct 421572 ATAAATGGTTGACCTGTTTCGATTTGGGCATCCACTATTGA----GAACCACAGTTTTTG 421517 Query 139270 G-CTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA 139328 | ||| || || | ||| | || || ||||| ||||| ||||| Sbjct 421516 GGCTTTTACTTTCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAA 421457 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 | ||| ||||| ||| || || || |||| | ||||||||| || |||| | Sbjct 421456 TTCTTCTCCGTAACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTC 421397 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 |||| ||| || | ||||||||| |||||| ||||| | ||||| | ||||| Sbjct 421396 CCCGTCTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATC 421337 Query 139449 GCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG---TTAAGGAAATCAAAAAC 139505 | ||| | || || | ||| | || ||| || | |||||| || |||| Sbjct 421336 CCTGGCCCTAACTTCCTCGGCTCCCGTATTC---TTCCTGAGTTCAAGGAATTCGAAAAT 421280 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTG 139562 ||||||||||| ||||| ||||| || || | | ||| || ||| |||||||| Sbjct 421279 ATCAGCGTGCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTG 421220 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 |||||||| || || || |||||||| | | ||| || | |||||| | | || Sbjct 421219 ATCGACGTAACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGT 421160 Query 139623 TCCGTTGGTGCTACGGATGGGACTGTTGC-GA-GCTCGGACGTCATGTACATTGATGCCG 139680 ||| || | | | | | || | || ||||| | || || |||| | ||| Sbjct 421159 GCCGCACGT--TCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCG 421102 Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTT 139740 ||||| || || | || || || |||| |||| ||||| ||| | ||||| | Sbjct 421101 ATTCCACCAGCATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTG 421042 Query 139741 ATGCTGTCGTCCTGCAT 139757 |||||||| || | ||| Sbjct 421041 ATGCTGTCATCTTTCAT 421025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449865224243960