Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2083 253 2e-61 seq4873 120 2e-21 seq4769 113 3e-19 seq4076 100 2e-15 >seq2083 Length=454743 Score = 253 bits (280), Expect = 2e-61 Identities = 1005/1564 (64%), Gaps = 32/1564 (2%) Strand=Plus/Plus Query 281337 TAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATAT 281396 |||||||||| || || | |||| || || | || || ||| ||||| |||| | Sbjct 102777 TAATCATTCTTTCGATCTCCTCTTTGGACAACCGACCCTTATCATTGGTAATTGTAAGAG 102836 Query 281397 TCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCA 281456 |||| | |||||||| || ||| || |||| ||||||||||| ||||| | Sbjct 102837 ATTTGGCGGTACCAGTTGATTTCTCCTGGGCGGTAACATCCAGAATACCATTAGCATCAA 102896 Query 281457 AATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT 281516 |||||| | || |||||||| || || || | |||| || | ||||| | || Sbjct 102897 GATCAAAGCTAACCTCAATTTGGGGAACACCACGAGGAGCGGGAGAAATCCCCAAAAGAT 102956 Query 281517 TAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGA 281576 ||| | || || ||||||||| | || | ||||| ||||| | || || | Sbjct 102957 CAAACTTACCAAGCAAGTTATTATCTCTCGTCATGGCACGTTCGCCCTCATATATCTGAA 103016 Query 281577 TAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAA 281636 || ||| ||| || || || | |||||| | |||| | | ||| ||| || | Sbjct 103017 TAAGGACTCCAGGCTGGTTGTCAGCATAAGTAGAAAATGTTTGAGTTTTCTTAACGGGGA 103076 Query 281637 TTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAG 281696 | || | ||||| |||||| |||||| | ||||||||| ||||| | ||| | | Sbjct 103077 TAGTGGAATTTCTGGGTATAATAACGGTCATCACACCACCAGCCGTTTCGATACCCAATG 103136 Query 281697 AAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT-TTGACCAACA 281755 | ||||| || ||||||| | || | || | || | | | || || ||| Sbjct 103137 ATAGAGGGGTAACATCAAGCAAGAGGACATCCTTAA-TAGTGGAGTGGTCTTCACCCTTC 103195 Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 || ||||||||||||| ||||| |||||||| || || |||||||| || | || | | Sbjct 103196 AGGATAGCTGCTTGAACGGCAGCCCCATATGCTACGGCCTCATCAGGGTTGATTGTCTTA 103255 Query 281816 TTTAGTT---TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGA 281872 | | || |||| | | ||| | | ||| | ||| || || ||| Sbjct 103256 CAAGGCTCCATTCCACCAAAGTAGTCCTTTAGCAAACTTTGAAT---CTTTGGTATTCGA 103312 Query 281873 GATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAAT 281932 | || || ||||| || |||| || | | | || |||| || | ||| | Sbjct 103313 GTAGACCCACCAACCAAAACAACTTGGTCAATGGCAGTCTTGTCCATCTTGGCATCAACG 103372 Query 281933 AAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 281992 | | |||| ||||| || | ||| || || | | ||||||| | |||||| || Sbjct 103373 AGAGCTTTATCAACTGGACCCAGAGTTTTCCTGAAGAGGGCTGAACACAATTCTTCAAAC 103432 Query 281993 TTAGCTCTAGTAA-GAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA- 282050 || ||||| |||| | ||| || ||||| || || || | |||||||| ||| | Sbjct 103433 TTGGCTCTGGTAATGCTTGA-ATAGAGGTCAATGCCGTCAAAGAGAGAATCAATTTCGAC 103491 Query 282051 --TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAG 282108 ||| | | | | | ||| || | || ||||| || ||||| | || | | Sbjct 103492 GCTCGCATTGGTACTTGTTGAA---AGAGTCCGCTTAGCCCGCTCACAGACAGTTCGCAA 103548 Query 282109 TCTTCGTAAGGCTTTTGCTGATTGATT--CAAATCTGTTTTATATTTTCTCTTGAAATCT 282166 ||||| | | | ||| |||| || || ||| |||||| ||| ||||| || || Sbjct 103549 TCTTCTCATTGATC--GCTTATTGGTTGTCATATCCTTTTTATGTTTCCTCTTAAACTCC 103606 Query 282167 TCAACACACCATGTTACAA-GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCC 282225 ||| || | | || | || | || ||||| ||||| || ||||| | ||| | || Sbjct 103607 TCAGCAAAATGAGCAACCATGATG-TTGTCAAAGTCTTCTCCACCCAAATGAGTGTCACC 103665 Query 282226 TGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGT 282285 |||| | | |||| || | ||||| || || ||||| | ||||||| ||| Sbjct 103666 GTTTGTAGATTTGACTTCAAAGACACCATCATCTTGATTCAAAATTGAAACATCAAAGGT 103725 Query 282286 TCCACCACCCATATCAAAAATAAGTACATT-----CATT-TCTTTGTCTTGGTTTTTATC 282339 |||||||| | ||||||||| | | || || | |||| || || ||||| Sbjct 103726 CCCACCACCAAGATCAAAAATCAACAGGTTTTCGCCACCCTTTTTGGTTTTCTTCTTATC 103785 Query 282340 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 282399 | ||| || |||| ||| ||||| || || || || || ||||| || |||||||||| Sbjct 103786 CAAACCGTATGCAATAGCTGCAGCGGTCGGCTCGTTGATGATTCTTAATGCATTAAGACC 103845 Query 282400 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 || || | | || || ||||| || |||||||| ||||| || ||||| || ||||| Sbjct 103846 AGAGATGGTGGCAGCGTCCTTAGTTGCCTGTCTTTGAGAATCATTGAAATAGGCTGGAAC 103905 Query 282460 AGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 |||| ||||| || |||||| ||||| | | || ||||| | ||||| || Sbjct 103906 GGTAACGACGGCCTCGGTTACTGTACATCCAAGAAAGGCCTCGGCTGTCTCCTTCATCTT 103965 Query 282520 ACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGA 282579 | || | ||| | ||||| | ||| || | | | | || ||| || | || Sbjct 103966 GCCCAACACCATAGCAGAAATCTCTTCGGGGGTAAAATCTTTTACTTCTTTAAGGTAACT 104025 Query 282580 TACTTCAAAATATGGTTTATTACCAAC--ATTAATAACTTTAAATGGCCAATATTTCATA 282637 || || | | || | || || | ||| || || | || ||||| | |||||| Sbjct 104026 GAC-TCGGATGACGGGCT-TTCCCTCCTTATTGATGACCTGGAAGGGCCAGTGCTTCATA 104083 Query 282638 TCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATA 282697 || | |||||| | || | ||| | |||||| | | || || ||||| | Sbjct 104084 TCCGCTTGAACTGACTCATCGTCGAAACGACGACCAATCAGCCTCTTGGCGTCAAAGACC 104143 Query 282698 GTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 282757 ||||| ||||| | |||| | | || ||| ||||||| || | | ||| Sbjct 104144 GTATTCTCCGGATTGGATCCAGCGTTGTCCTTTGCTACATCTCCGATAATTTTTTCAACA 104203 Query 282758 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 282817 || || || || || || || || || || | || || ||||| || ||||| ||||| Sbjct 104204 TCCGTGAAGGATACGTACGAAGGGGTAGTTCTGTTCCCCTGATCGTTAGCAATGATTTCG 104263 Query 282818 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 ||||| || | ||| | || || |||||| | || ||||| ||||| || |||| | Sbjct 104264 ACTTTTCCGTGTTGAAAGACTCCAACACAAGAGTAGGTAGTTCCCAAATCTATTCCAACA 104323 Query 282878 GCAA 282881 |||| Sbjct 104324 GCAA 104327 >seq4873 Length=647740 Score = 120 bits (132), Expect = 2e-21 Identities = 201/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 282184 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 282243 ||||||||| || ||||||||||| || || | ||| | ||| |||||| || | Sbjct 351238 AAGACGATTGTCGAAATCTTCACCACCTAAATGAGTGTCGCCTTTAGTAGCTGCAACCTC 351179 Query 282244 GAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA 282303 || | ||||| || | ||| | | || || ||| ||||||||||||| ||| | Sbjct 351178 AAATACTCCATTGTCGAAAGATAGAGCAGACACGTCAAACGTTCCACCACCCAAATCGTA 351119 Query 282304 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || | || ||||| |||| | || ||| | | | ||| | |||| ||||||||| Sbjct 351118 AACGAATATGTTCATCTCTTGCTGTTTGTTGT---CGATTCCAAAAGCAATAGCAGCAGC 351062 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||||| || || |||| || | ||||| | ||| || || || ||||||||||| Sbjct 351061 TGTTGGCTCGTTGATAACTCGAAGTACATTCAAACCTGCGATGGCACCGGCATCTTTAGT 351002 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| |||| ||||| || || || || || || ||||| |||| Sbjct 351001 ACTTTGTCTCTGTGGGTCGTTGAAGTAGGCGGGGACTGTGATAACTGCAT 350952 >seq4769 Length=216924 Score = 113 bits (124), Expect = 3e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 || ||||||||| || || || || || ||||| || || || |||| | || ||||| Sbjct 157045 ATTAAGACCATATGCCAATGCGGCCGCTGTTGGCTCGTTGATGATTCGAACCACGTTAAG 157104 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 |||||| ||| || |||||||| || ||||||| ||| |||||||| ||||| ||||| Sbjct 157105 ACCAGCGATTGAACCAGCATCTTTCGTAGCTTGTCGTTGAGAATCGTTGAAATAGGCAGG 157164 Query 282457 AACAGTAATAACGGCAT 282473 |||||| || || |||| Sbjct 157165 AACAGTGATGACTGCAT 157181 >seq4076 Length=468004 Score = 100 bits (110), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 163402 ATCAAGGTGGTAA-ACGA--CCCGGTTCTTTTGCTATTTTTATTGAACCGTGGCATGGAG 163458 ||||||||||||| | || || || ||||||||||||| | ||||||| ||||| | | Sbjct 421218 ATCAAGGTGGTAACAAGAGGCCAGGATCTTTTGCTATTTATCTTGAACCCTGGCACGCTG 421277 Query 163459 ACATATTCTTTTTTCTTGATCTCAAGAAAAATACTGGAGCAGAAACAGAAAGAGCCAGAG 163518 | || ||| || ||||| |||| ||| ||||| ||||| || || || ||||| | Sbjct 421278 ATATTTTCGAATTCCTTGAACTCAGGAAGAATACGGGAGCCGAGGAAGTTAGGGCCAGGG 421337 Query 163519 ATTTATTTTTGGGTTTGATGATTAATGACATTTTCATGGAAAGAGTTTATAAAGACGATG 163578 |||||||| | | | | ||| || | |||||| |||||||| | |||||| | Sbjct 421338 ATTTATTTCTCGCTCTTTGGATGCCGGATTTGTTCATGAAAAGAGTTGAGGAAGACGGGG 421397 Query 163579 TTTGGTCATTAATGTGTCC 163597 |||| | |||||||| Sbjct 421398 ACTGGTGTCTGATGTGTCC 421416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740347755629082