Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq567 197 3e-45 >seq567 Length=338301 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| || ||||| ||||| ||||||||||||||||| |||||||| || Sbjct 137923 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTA 137982 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 137983 AGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGA 138042 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| | ||| || | || | || ||| | ||| ||||| Sbjct 138043 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTACA 138102 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || ||||| ||||||||||| |||||||||||||| Sbjct 138103 TCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || ||||| | ||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct 136304 TACCACCCCTCAACCTAAGAACTAAGTGGAGAGTAGATTCCTTCTGGATATTATAGTCAC 136363 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | |||||||| || || || || ||||| || ||||| |||||||| || | Sbjct 136364 TCAGAGTGCGGCCGTCTTCAAGCTGCTTACCGGCAAAAATCAGTCTCTGTTGATCAGGGG 136423 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||||||||| | || ||| | |||| | || || || || | Sbjct 136424 GAATTCCTTCCTTATCTTGAATCTTAGACTTCACAGTCTCAACAGAGTCGTTGGGCTCCA 136483 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| ||| || ||||| || || || || || || || ||||||||| Sbjct 136484 CATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 136533 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || ||||| | ||||| ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 137465 TACCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGC 137524 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | | ||| || || || |||||||| || || || ||||| ||||||||||| | Sbjct 137525 TTAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGG 137584 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||| | |||||| | |||| | || || || || | Sbjct 137585 GAATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCA 137644 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| ||| || ||||| || || || || || || || ||||||||| Sbjct 137645 CATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 137237 TACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGC 137296 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || | |||||| || ||||| || ||||| |||||||| |||| Sbjct 137297 TAAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAG 137356 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| || || | |||||| | || | | |||||| || || | Sbjct 137357 GAATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAA 137416 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||| ||||| || | || || ||||| || ||||| Sbjct 137417 CATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 140 bits (154), Expect = 6e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 |||||| || || |||||||||||||| ||||||||||| || | | ||| || || Sbjct 136095 AACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGTACGACCATCCTC 136154 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 | ||| || || ||||| || ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 136155 CAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTCTTG 136214 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 ||||| | || ||| | |||| | || || || || || |||| ||| ||||| || Sbjct 136215 GATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGATCGTTTT 136274 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| || ||||| Sbjct 136275 TCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||||| ||||| || |||||||||||||| || ||||| ||| Sbjct 137011 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTC 137070 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| ||||| ||||| ||||| || ||||| || ||||| || || Sbjct 137071 AGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGA 137130 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| | || ||| | |||| | ||||| || || || Sbjct 137131 ATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACA 137190 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || | || || || || || ||||| Sbjct 137191 TCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||||| ||||| || |||||||||||||| || ||||| ||| Sbjct 137695 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTC 137754 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| ||||| ||||| ||||| || ||||| || ||||| || || Sbjct 137755 AGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGA 137814 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| | || ||| | |||| | ||||| || || || Sbjct 137815 ATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACA 137874 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || | || || || || || ||||| Sbjct 137875 TCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 116 bits (128), Expect = 7e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 |||||||| || || || ||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || | |||||| | |||| | || || || || || |||| ||| || ||||| || Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || ||||||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCATT 137010 Score = 86.0 bits (94), Expect = 1e-11 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||||| || |||||||||||||||||||| || ||||||||| Sbjct 136534 CCACCTCTCAACCTAAGAACCAAATGCAGAGTAGATTCTTTCTGGATGTTATAATCACTA 136593 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCT-TTGTTGATCTGG 82699 || | | ||| || || | ||| || || ||||| || ||||| | ||||||| || Sbjct 136594 AGCGTGCGACCATCCTCCAATTGCTTCCCGGCAAAAATCAGTCTCTAGTTGATCGGG 136650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754778891623