Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4076 113 1e-19 seq4235 98.7 2e-15 seq2471 98.7 2e-15 >seq4076 Length=468004 Score = 113 bits (124), Expect = 1e-19 Identities = 206/301 (68%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 |||| | || || || |||||| | || || |||||| || | | || || ||| Sbjct 421161 CTTCTAACGGTCTCGTACCAATGCTTAGGGTATTCAACAACGCATCCCGTTACGTCGATC 421220 Query 110734 AAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 |||||||||| ||| || || |||||||| ||||| ||||| ||||| | |||| Sbjct 421221 AAGGTGGTAACAAGAGGCCAGGATCTTTTGCTATTTATCTTGAACCCTGGCACGCTGATA 421280 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | || |||||| | ||||| | || ||| ||| || ||| || || | |||| Sbjct 421281 TTTTCGAATTCCTTGAACTCAGGAAGAATACGGGAGCCGAGGAAGTTAGGGCCAGGGATT 421340 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGT 110910 ||||| || | ||||| | ||||| ||||||||| | ||| | ||| | || | Sbjct 421341 TATTTCTCGCTCTTTGGATGCCGGATTTGTTCATGAAAAGAGTTGAGGAAGACGGGGACT 421400 Query 110911 GGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTG 110970 ||| ||| |||||||||||| | ||| || ||||| || || ||| |||| || | Sbjct 421401 GGTGTCTGATGTGTCCTCATGCATGTCCCGGCCTATCAGACAGTTACGGAGAAGAATTCG 421460 Query 110971 A 110971 | Sbjct 421461 A 421461 >seq4235 Length=41994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| | ||||||| ||||| ||||||| |||| ||| ||| || Sbjct 31397 TTCAATCGTCAACCTACCTTGCATAAGATGTCGATGATGGGTCATCGAGTTCGAGTGTTG 31338 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || || || | ||| | |||| || ||||| || || ||||||||| Sbjct 31337 CCTTGGTCAACCTTCCGTCTTAATTTGAGTGTCACCACCCCTTACAACGCCGATTTTGAT 31278 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATCAA 305489 || ||||||||||| |||||||| |||||||||| Sbjct 31277 GGTGATGAAATGAACATGCATGTTCCTCAATCAA 31244 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||||||| ||||||| | || || || |||||| | || ||| | | ||| Sbjct 31841 TTACAATATCACTGTGCAACACTGATAGACAACGAAATTCCAGG-CTTACCAAAGGCTCT 31783 Query 304946 -CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 |||| ||||| |||| || || | ||| || || | |||| ||| || || || Sbjct 31782 CCAAAAGTCTGGTCGACCCTTGAAATCTCTTAAACAGCGATTAAAAGCTAAGGACGGCCG 31723 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 |||| |||| || | ||||| ||||| |||||| ||||||| | ||| || ||||| Sbjct 31722 TATTAGAGGAAACTTGATGGGCAAACGGGTTGATCATAGTGCACGCGCTGTCATTACACC 31663 Query 305065 TGATTCTCA 305073 |||| |||| Sbjct 31662 TGATCCTCA 31654 >seq2471 Length=253826 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 167199 CGAAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTA 167258 ||||||| || ||| | |||| | || | | || | |||| | ||| ||||||||| Sbjct 141068 CGAAATACTTGAAACGCGCACATTAACTGCTCATCCACACTCATCATACCTCCAGCATTA 141009 Query 167259 TCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGA-TTGAAAA 167316 || ||||| | | || || ||||| |||||||| | ||| || | || ||| ||| || Sbjct 141008 TCAAATTC-TCCACAGTAGTTTGGCGCTGAAAACAGAGTTACAAGTTGACGCCTTGCGAA 140950 Query 167317 ATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTAC-AAGTTCAACTCCTAtt 167375 | |||||||||||||| |||||||||| ||| ||||| ||| | || || || | || Sbjct 140949 A-AATTCATAACCATCCTCAACAACTTGATGTGCACGGCATACTAGGTCCATATCGTGTT 140891 Query 167376 tttttAAGAAAATTAG 167391 | ||||| ||| |||| Sbjct 140890 TGTTTAA-AAATTTAG 140876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186725258833477