Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq567 120 7e-22 >seq567 Length=338301 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| ||||||||||||||| |||| ||||| ||| | || Sbjct 136296 TTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAACGACTCTGT 136237 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || | || ||| ||||| ||||| || ||||||||| || || || ||||| Sbjct 136236 TGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAACAGAGACT 136177 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || ||||| ||||| ||||| | || | |||||| || ||||||| Sbjct 136176 GATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGCGATTATAATATCCAGAA 136117 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||||| ||||| | ||||| |||||||| Sbjct 136116 AGAATCTACACTTCATTTAGTTTTAAGACTTCG 136084 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| ||||| || ||||| |||||| | || || || |||| | || || | Sbjct 137223 CAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAATGACTCTGTTGAGAC 137164 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||||||| ||||| || ||||| || || Sbjct 137163 TGTTAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAGCAGAGACTGATTTT 137104 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| | |||||||| | ||| || || || ||| |||||||||| || Sbjct 137103 TGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAACATCCAGAAAGAATC 137044 Query 206364 TACTCTTCACCTTGTT 206379 ||| || ||| | ||| Sbjct 137043 TACCCTCCACTTGGTT 137028 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| ||||| || ||||| |||||| | || || || |||| | || || | Sbjct 137907 CAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAATGACTCTGTTGAGAC 137848 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||||||| ||||| || ||||| || || Sbjct 137847 TGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAGCAGAGACTGATTTT 137788 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| | |||||||| | ||| || || || ||| |||||||||| || Sbjct 137787 TGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAACATCCAGAAAGAATC 137728 Query 206364 TACTCTTCACCTTGTT 206379 ||| || ||| | ||| Sbjct 137727 TACCCTCCACTTGGTT 137712 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||||||||| | || || || ||| | ||||| | Sbjct 137450 AAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAATGATTCTGTCGAGACT 137391 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| || ||||||||| || || || ||||| || || Sbjct 137390 GTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAACAGAGACTGATTTTT 137331 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||| ||||| | || | |||||| ||| |||||||||| ||| Sbjct 137330 GCCGGGAAACAATTGGAGGATGGTCGCACACTTAGCGATTATAACATCCAGAAAGAATCT 137271 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||| | ||| Sbjct 137270 ACTCTCCACTTGGTT 137256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||| | || || ||||| || ||| | || || || | || Sbjct 138146 CAGATATTTGTGAAGACGTTGACTGGCAAAACTATAACTCTCGATGTAGAGCCTGACGAT 138087 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| | || || ||||||||||| || ||||| ||| ||| ||| || Sbjct 138086 TCGGTCGAGACCGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCAACAG 138027 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| |||||||| | || ||||| | ||| | ||| || || || Sbjct 138026 AGACTCATTTTCGCAGGAAAGCAACTTGAGGATGGTCGCACTCTTAACGACTATAATATC 137967 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||| |||||||| ||| | ||| Sbjct 137966 CAGAAAGAATCTACTCTCCACTTGGTT 137940 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || ||| |||| ||||| ||| | || || | Sbjct 137678 AAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAACGACTCTGTTGAGACG 137619 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||||||||| || ||||||||| || || || ||||| || ||| Sbjct 137618 GTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAACAGAGACTGATTTTC 137559 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| ||| | || ||||| | ||||| ||||||||| ||||||| || || Sbjct 137558 GCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAATATCCAGAAGGAATCC 137499 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||| | ||| Sbjct 137498 ACTCTCCACTTGGTT 137484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181733627051197