Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq587 136 9e-28 seq4128 87.8 4e-13 >seq587 Length=3898 Score = 136 bits (150), Expect = 9e-28 Identities = 258/377 (68%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 27741 AAATTCTATCTTTTTCGCCTTACCGTAGCGATCAAACTCGGAACGGGTCGTATTCGTTCC 27800 ||| ||||||||||| || || || |||||||| ||||| | | || | | || Sbjct 466 AAACTCTATCTTTTTAGCTTTGCCATAGCGATCGAACTCCTGATGAGTTTCCTGCAACCC 407 Query 27801 GGTCAGGACATACATGCCGTAAATCTGCCCGACGCCATCAATCAAAGGCCAGGGTCGTCC 27860 || | ||||||||| |||||||| |||||||||||| |||| ||||||| | | || Sbjct 406 CGTGATGACATACATCCCGTAAATGGACCCGACGCCATCGATCAGGGGCCAGGCTAGCCC 347 Query 27861 TGTATACGCC--TGCGTGGTCAGCAGCGACAGCGACACTTCGCCACCTGTAATTTCAGGA 27918 || || ||| || | ||||| | |||||||| | ||| || |||||||| ||| Sbjct 346 GGTGTAGGCCATTGTCGAGACAGCACC--CAGCGACAAGTTGCCGCCGGTAATTTCGGGA 289 Query 27919 TAAAGCACACCAGAAAGAACGATGCGATCATCACCTGCACCGATATACTGCCAGCTTGCT 27978 || |||| ||| || | | | |||||||| || | |||||||| |||| Sbjct 288 TACAGCAACCCACCCAGCGTCAGCTGGTTCTCACCTGCGCCAACGTACTGCCATTTTGCG 229 Query 27979 GAACGGTTAACGCGTTCATTTTTCACATGCCGCCAGCTTTTGTTTTGCTGTAACTGCTGA 28038 | | || || |||||||| || ||||||||| | | |||||| |||||| Sbjct 228 CTCCTGCCCACACGATCATTTTTAACGTGCCGCCAGTTACGAGATAACTGTAATTGCTGA 169 Query 28039 TGCGGCAGCGTGCGCAGCTCAAAAACAAACATGCCGTAGATCATCATCATGGCCATGACT 28098 | ||||| || | || ||||| ||||| | || | | ||||||||| | || ||| Sbjct 168 TAGGGCAGTGTCCTGAGTTCAAATACAAAAAGTCCAAATACCATCATCATAGTTATTACT 109 Query 28099 CC---TCAATCTTTATC 28112 || | |||| ||||| Sbjct 108 CCTTATTAATCGTTATC 92 >seq4128 Length=11080 Score = 87.8 bits (96), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 154 GCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGTCTGCTGAATA-GTGCT 212 || ||||| ||||| || |||||||| || || || | ||| || |||| ||| | || Sbjct 783 GCGTCCTGAAGATATTCAGGTGCAAAGTGAGCGTAGGCCATAGTTTGCTCAATTCGCGC- 841 Query 213 ATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAATCATGAAGTGAGTGGC 272 |||||| | || ||||| || || || || |||| ||||||||||| || || || || Sbjct 842 ATGTCCTAAGATCCTCTGTAATGTAATTATGCTCCCCCCATTAATCATAAAATGCGTCGC 901 Query 273 AAAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATCAGGCCTCACCTTTCT 332 || | || |||| |||| ||| ||| || ||||||||||| | |||| || Sbjct 902 GAAACTGTGGCGTAGTGCATGCGTCGCCTGGCCGGTCGGAAGATCAGGTTTTACCTCCCT 961 Query 333 GA 334 || Sbjct 962 GA 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114475373427584