Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4076 242 5e-59 seq3622 228 1e-54 >seq4076 Length=468004 Score = 242 bits (268), Expect = 5e-59 Identities = 928/1438 (65%), Gaps = 33/1438 (2%) Strand=Plus/Minus Query 68710 TTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGT 68769 || || | ||| ||||| || || | ||||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 68770 TCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACC 68829 || || ||||| ||||| | ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 68830 AATAAACTATTTC-TAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 |||| ||| || | |||| |||| | || || || || || | | ||||||||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 | ||| |||||| || ||| | ||||||||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT-AGTTCACAACTTGCCTCTAATG 69007 || | ||| ||||||||||| || | || || ||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCT-TTTGGCTCAATTCGCATGAAGACTCAAGGG 421986 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 || | | ||| ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 69068 ATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127 | |||||| | | || | | | ||||| ||||| || ||||| || || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 69128 TATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 69187 |||| | |||| || ||| ||||||| |||| ||| ||| | ||| || | || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 69188 TATTAAGATTTCGGACTACT-ACTTTAACCACGTCCTTTAGTTT-GAGAAAATCAAATCG 69245 | || | | || | || | | |||| | || | ||||| |||| | || | Sbjct 421805 TGTTCATA-TTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTG 421747 Query 69246 ----TCCAT------CTATAACAAACATATTCAG--TGCTACA--GATGCTAGATTACAA 69291 | || ||| || ||||| || || | | || | ||| || Sbjct 421746 GGATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCAC 421687 Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351 || || ||||| | || |||| | ||||| || ||||||||||| ||||| Sbjct 421686 ACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTG 421627 Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || || || | || ||||| || ||||| ||||| || ||||| | |||||| Sbjct 421626 ATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAAT 421567 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||| ||||| || || | || | || || ||| | | | | || || Sbjct 421566 GGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACA-GTTTTTGGGCTT--TT 421510 Query 69472 ACGGTCTTGTAACG-----CTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCAT 69526 || || ||| ||| ||||| ||| || | |||| |||| |||||||| | Sbjct 421509 ACTTTC-TGT-ACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTT 421452 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 |||| || || | || |||||| ||| |||||||||| |||| | | | Sbjct 421451 CTCCGTAACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGT 421392 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 | |||| ||||| |||||| || | ||| || ||||||||||| | ||| | ||| |||| Sbjct 421391 CTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGG 421332 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 ||| ||| || ||| ||||| || | || || || || || | |||||||| | Sbjct 421331 CCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGT 421272 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 |||| ||||| ||||| || || | ||| || | || || || || ||||| | || Sbjct 421271 GCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGT 421212 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTG 69826 | | || | ||| || | || || ||||| || | | ||| ||||| | || | Sbjct 421211 AACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACG 421152 Query 69827 TTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTG 69886 |||||| ||| | || || ||||| || | | || || ||||| || | Sbjct 421151 TTCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAG 421092 Query 69887 CCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCAT 69946 | ||||| || || || |||||||||| | ||||||| ||||| |||| Sbjct 421091 CATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCAT 421032 Query 69947 CTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATA 70006 || ||||| || | || || |||| || || | | | || ||||| || | Sbjct 421031 CTTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACA 420972 Query 70007 ATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTG 70066 |||| || | ||||| ||| | | |||||| | || | ||| || | |||| Sbjct 420971 ATGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTT 420912 Query 70067 ATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| ||||| || | || ||| | | ||||| | ||| | |||||| || |||| Sbjct 420911 GTTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTC 420855 >seq3622 Length=296610 Score = 228 bits (252), Expect = 1e-54 Identities = 632/979 (65%), Gaps = 104/979 (11%) Strand=Plus/Minus Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||| ||||| || ||||| || ||||||||||| ||||| ||||||| ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 39387 CCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAAA-------TCCTAATT 39437 |||||||||| || ||||| ||||| | || | | | ||| | || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 39438 CTGAAATCAAT-------------CTATCTGCAACAAATTCTATGTATGTTTTCATCATT 39484 | |||| ||| | ||| || ||||| || || ||| || || ||| Sbjct 278519 C-GAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATC 278464 Query 39485 TCACA---ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 ||| ||||||||| || | | || ||||| || || || | ||||||||||||| Sbjct 278463 TCAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCG 278404 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA---T 39598 || || || || || || || | || ||| | | ||| | || | Sbjct 278403 ATTTCAACTGCATCCACAATAAT---TCTTTGAACCAGAGATTGTGATGGTTTCACGGTT 278347 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||| ||||||| ||||| ||||| ||| ||| || |||||||| || || || | | Sbjct 278346 AAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAGT 278287 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| || | | |||||||||| |||||||||||| | |||||| ||||||||| Sbjct 278286 TCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGCA 278227 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || || ||||||||||| || ||||| || | ||||| ||||| | ||| | |||| Sbjct 278226 AATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGTAA 278168 Query 39779 ----CTTGTATCA--------------------TTATGTATCCACTTCTGTGCCCAATCA 39814 | | ||| | | || ||||| || | ||||||| | Sbjct 278167 GGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAATTA 278108 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCA 39874 || || || ||||| || | ||||| | |||| ||||| | |||||| Sbjct 278107 GCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTTCATCT 278048 Query 39875 CTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATC 39934 |||||||||| ||||| || || || ||||| ||||| || ||||| | |||||||| Sbjct 278047 ATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAACA 277988 Query 39935 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTT 39994 |||| ||| |||||||| ||| | | |||||||| |||| ||||| |||| || Sbjct 277987 GCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCTCGCAAAAACGTT 277928 Query 39995 TCCGCC------------------------AAATTTTCATTCACTATTCCATCACTAGCG 40030 || ||| | |||||| |||||||| |||||||| || Sbjct 277927 TCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTCGCA 277868 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAAT-ATTTTTCATCGGGT-------------- 40075 |||||||| || | || | ||| |||| | || | ||| | Sbjct 277867 GCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAACGAA 277808 Query 40076 -----GTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 40130 |||| || ||| |||| || || || |||| ||| || ||||| | |||| Sbjct 277807 AAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAGTCC 277748 Query 40131 AAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAA 40190 ||||||| ||| | ||||||||||| | | ||| |||||| | || | || ||||| | Sbjct 277747 AAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAAAGA 277688 Query 40191 TAACAAATCTATTTGGATT 40209 |||| || | ||| ||||| Sbjct 277687 TAACGAAACGATTAGGATT 277669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859368325480