Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3622 163 2e-35 >seq3622 Length=296610 Score = 163 bits (180), Expect = 2e-35 Identities = 610/959 (64%), Gaps = 107/959 (11%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 ||||| || | || ||||| || ||| || | |||||||| || ||| || |||||| Sbjct 277690 TTTCCTATCAACTACCATGATATTTGGGAATTCTACAAAAAGGCGGTGGCTTCGTTTTGG 277749 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGA-----TTGCA------- 43816 || | ||||| || ||||| |||| ||| | | ||||| ||| | Sbjct 277750 ACTGTCGAAGAGGTGGATTTATCTAAGGACCTCGATGATTGGGCGAATTTGAAGGTTTTT 277809 Query 43817 -------TTAAAA-CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTG 43868 |||||| || ||| ||||| || |||| || | || |||||||||| Sbjct 277810 CGTTTATTTAAAAGCCGGGGGAACGTCATTTCATTTCTTACGTGCTCGCTTTTTTTGCTG 277869 Query 43869 CGAGCGACGGGATAGTCAATGAAAATTTGGTTAG---------------TCGG------- 43906 |||| || |||||||| || |||||| | || || || | Sbjct 277870 CGAGTGATGGGATAGTGAACGAAAATCTAGTAAGATCTTCCCTTATTATTCAGGCTGAAA 277929 Query 43907 --TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 ||| || ||| | |||| ||| |||||||| | ||| || || || || | || Sbjct 277930 CGTTTTTGCGAGAGGCTCAAACACCTGAAGCACGTTTTTTCTACGGATTCCAGGTGGCTG 277989 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGC 44024 | ||||| |||||||||| |||||||||||| |||| || || ||| | |||||| Sbjct 277990 TTGAAAACGTTCATTCGGAGATGTACAGTCTTTTGATCGACACATACGTTAAAGATATAG 278049 Query 44025 ACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACC-TGCGAT--TAAACATAAA 44080 | || | | || | || ||| ||| | ||||| |||| || | | |||| || Sbjct 278050 ATGA-ACGTATGAAGTTCTTTCGTGCTGTTGAAACGTTACCATGTGTTGCTAAA---AAG 278105 Query 44081 GCAGACTGGGCCCTTAAATGGATAAATTCAA-----------ATGATTCTTTTGGAGA-- 44127 || | ||||| || |||||||| || || || || || | || Sbjct 278106 GCTAATTGGGCTCTCAAATGGATCGATCAAAGTAGAGTATATATTATCCTAATATAGGCA 278165 Query 44128 ----ACGACTTG-------TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || | || | || ||||| | || ||||| ||||||||||| || || Sbjct 278166 CCTTACAATGTGAGGGTAGTTGCCTTTGCTCT-GTCGAAGGAATTTTCTTTTCTGGTTCA 278224 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||| ||||| ||||||||||| || || ||||| |||||||| ||| | || ||| Sbjct 278225 TTTGCTGCCATTTTTTGGTTAAAAAAGCGTGGTTTAATGCCTGGCTTGGCCTTCAGTAAT 278284 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || | || || | ||||| || | ||| ||||| || |||||| | || | || Sbjct 278285 GAACTCATCAGCAGGGATGAGGGACTTCATACTGATTTCGCATGCTTGATGTTTAGTCAT 278344 Query 44297 CTAGGAGACGATAAGCCTTC---ATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | | || || || || || | | | | ||| ||| |||| || ||||| Sbjct 278345 TT---AACCGTGAAACCATCACAATCTCTG--GTTCAAAGA-ATTATTGTGGATGCAGTT 278398 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAA 44413 | || ||| |||| ||| |||| |||| ||||||| | ||| || |||||||||| Sbjct 278399 GAAATCGAAAAAGAGTTTTTGACTGAAGCACTACCTGTGAGTTTGATCGGAATGAATGCC 278458 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 || |||| | |||||||||| | | || ||||| | | |||| || |||| | Sbjct 278459 ATTGAGATGTGCAAATATATTGAGTTTGTCGCTGATCGCCTCATGTTGGCCCTTGGTTTC 278518 Query 44474 GATAA---ACACTATATTGTAC------------------AAAACCCGTTTGATTTTATG 44512 ||||| || || | || ||| |||| || || ||||| ||| Sbjct 278519 GATAAAGTACTCTTTTTTTTACACCAGATCTTCAATGCTGAAAATCCATTCGATTTCATG 278578 Query 44513 GAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || || ||||||| |||||||| ||||| ||||| ||||| || |||||||| Sbjct 278579 GATCTGATCTCAATGGAAGGAAAAACAAATTTTTTCGAAAAGCGCGTCGGGGAATATCA 278637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428113120785