Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4076 107 2e-18 >seq4076 Length=468004 Score = 107 bits (118), Expect = 2e-18 Identities = 461/713 (65%), Gaps = 37/713 (5%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| ||| || ||| ||||| || | |||||||| ||||| ||| | || ||||| Sbjct 421547 CAAATCGAAACAGGTCAACCATTTATTGTCTACAAAGATGCCTGCAACAAGAAAAGTAAC 421606 Query 104969 CAAAAGAATTTGGGTGTGATCAAG---AGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 |||||||| | || || ||||| ||| ||||| || || || || | |||| Sbjct 421607 CAAAAGAACCTTGGAGTCATCAAATCAAGT---AATCTATGCACCGAGATTGTCGAATAC 421663 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 | || |||| || |||||||| || | || || | || || || ||| | Sbjct 421664 AGCGATCCCAATGAAACTGCTGTGTGCAATTTGTGTTCCATTTCGCTTCCTAAATATATT 421723 Query 105086 GATCCAGAGA------CAAAG---ACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 105136 || ||| |||| || || ||| | ||||| |||||| |||| ||| Sbjct 421724 GACAATAAGAAATTATCAAATCCCACCTTCAATTTCAAGAAACTTCACGAAATTACTAAA 421783 Query 105137 ACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 105196 | | || || | |||| ||| |||||| | |||||||| ||| ||| Sbjct 421784 ATCATTACTGTTAATATGAACAAAGTCATTGATCGCTCGTTTTACCCTGTTCCTGAAGCT 421843 Query 105197 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG-- 105254 | | |||||||| | || | |||||||| | |||||||| ||| | || |||| Sbjct 421844 GGAAGATCTAATAGTCGTCATAGACCAATTGGGATAGGTGTTCAAGGTTTGGCTGATGCG 421903 Query 105255 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCA 105314 ||| | | | || || | | || ||||| || ||||| | ||| | ||| | Sbjct 421904 TATGTAAT-TATG-CGTTATCCTTTCGATTCAGAGGAAGCCCATGAACTTAATAAAAAAA 421961 Query 105315 TATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGG--CAGAGGT 105369 | |||||||| || ||||| || || |||||| | |||| || ||| || | | Sbjct 421962 TTTTTGAGACAATCTATCATGCTGCCCTTGAGTC---TTCATGCGAATTGAGCCAAAAGC 422018 Query 105370 TGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA 105429 ||||||| |||||||| | ||| || || ||||| |||||| | ||||||| || Sbjct 422019 --ATGGTCCTTATGAAACTTATGAAGGCTCCCCAGCGAGTCAAGGGATTCTTCAATACGA 422076 Query 105430 TATGTGGGAAGGTGAGACCA--AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT- 105486 |||||||| || | | |||| || || | | || ||||| | | |||||| || Sbjct 422077 TATGTGGGGAG-TAACACCATCAGATTTA-TGGGATTGGGATGGCTTGAAGGAAAATATT 422134 Query 105487 -CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCG 105545 ||| | | || | | ||||||||||| | | || ||||| || || ||||| Sbjct 422135 TCAAA-ATATGGCT-TACGTAACAGTCTATTGACTACTTGTATGCCCACTGCATCCACAT 422192 Query 105546 CACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||| || || || ||||| | | ||||| | || | || |||||| Sbjct 422193 CTCAAATATTTGGAAACAATGAGTCCACAGAACCTTTTACCAGCAATATCTAT 422245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218827094680