Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq4128 129 1e-25 seq264 84.2 5e-12 >seq4128 Length=11080 Score = 129 bits (142), Expect = 1e-25 Identities = 245/351 (70%), Gaps = 30/351 (9%) Strand=Plus/Minus Query 31405 CGGACAAATAGCCCCGGCGCTCGCGCACATTGGGCAAGACTCAACAACCTTGCACCACTC 31464 ||| ||||| || ||||| ||||| ||| |||||||||||| |||||||| ||| ||||| Sbjct 1920 CGGTCAAATCGCACCGGCCCTCGCACACTTTGGGCAAGACTTAACAACCTCGCAGCACTC 1861 Query 31465 AGACCAAAAGACTGGCTGACGATTTATTCAG-----CATATGTGTGCAGTA------AAT 31513 ||||||||||||||| | || ||| | ||| |||| | | | | | | Sbjct 1860 AGACCAAAAGACTGGTTAACAATTAAC-CAGGCTTACATACATTTCAAATGTCTATTATT 1802 Query 31514 GTACGAAAGAAAATTGCATTA---ATTTTCAA---GT--AG---TAGAAGTAAACAGCGT 31562 | ||||| | ||| ||| | | || ||| || || || | | |||| Sbjct 1801 GGTCGAAA-AGTATT-CATCACATAATTGCAACGCGTTAAGGCCTAAAGGCAAACGCACC 1744 Query 31563 CATCGGAGGGCTTT---ATGTCTATTAAAAAGCTCGATGATGGTCGTTATGAAGTGGACG 31619 |||||||||| ||| ||| ||||||| || |||||||||||||| |||| ||||||| Sbjct 1743 CATCGGAGGGTTTTCTTATGACTATTAAGAAACTCGATGATGGTCGATATGGAGTGGACA 1684 Query 31620 TCAGACC-GCAGGGTGCAGATGGAAAACGTATCAGGCGGAAATTTAAAACTAAAGGTGAA 31678 |||| || || || ||| ||||||| |||||| | |||| ||| | | ||| ||||| Sbjct 1683 TCAGGCCTGCTGGTCGCA-ATGGAAAGCGTATCCGCAGGAAGTTTGATAAGAAAAGTGAA 1625 Query 31679 GCTCAAGCATTCGAACGTCATGTGCTGGTTAACTACCACAACAAAGAGTGG 31729 || ||| ||||| ||| | | | ||| | |||| |||||| ||| Sbjct 1624 GCGGCAGCTTTCGAGAAGCATACCCAGTTCAACCATCACACCAAAGAATGG 1574 Score = 98.7 bits (108), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 32345 CTCAGGGAAGTAAAACCCGATTTACCTGACGGACAAGCAGTACATGTTTTGAGGCATACA 32404 |||||||| |||||||| ||| | || ||| || || |||| | | || | Sbjct 964 CTCAGGGAGGTAAAACCTGATCTTCCGACCGGCCAGGCGACGCATGCACTACGCCACAGT 905 Query 32405 TTTGCCACACATTTTATAATGAATGGAGGTAACATAATCACATTGCAGCGCATCCTGGGT 32464 || || || |||||||| || ||||| || | |||||| ||||| ||| | ||| | || Sbjct 904 TTCGCGACGCATTTTATGATTAATGGGGGGAGCATAATTACATTACAGAGGATCTTAGGA 845 Query 32465 CATTCTAACATTCAGCAAACTATGACCTACGCACACTTTGCACC-GGATTTCTTACAAGA 32523 ||| | ||| ||||||||||| ||||||| ||||||||||| | || |||| || || Sbjct 844 CATGCGCGAATTGAGCAAACTATGGCCTACGCTCACTTTGCACCTGAATATCTT-CAGGA 786 Query 32524 TGCTGTGACTCTTAACCC 32541 || | | |||||||| Sbjct 785 CGCGATCTCGCTTAACCC 768 >seq264 Length=5517 Score = 84.2 bits (92), Expect = 5e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 24417 GCGCGCAGTGCTTTCCCCGCCTCGCCCGCCCGCTTCATGGGGCGGTTTTAATGCAGTAGC 24476 |||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||| ||| Sbjct 248 GCGCGCAGTGCTTTCCCCGCCTCGCCTGCCCGCTTCGTGGGTCGGAATTAATGCAGGAGC 307 Query 24477 A 24477 | Sbjct 308 A 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104431260134058