Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq4128 134 3e-27 seq264 131 3e-26 >seq4128 Length=11080 Score = 134 bits (148), Expect = 3e-27 Identities = 248/352 (70%), Gaps = 30/352 (9%) Strand=Plus/Plus Query 945 AACCACTCTTTGTTGTGGTAGTTAACCAGTACATGACGTTCGAATGCTTGAGCTTCACCT 1004 ||||| |||||| |||| | ||| | | | ||| ||||| ||| ||||||| | Sbjct 1572 AACCATTCTTTGGTGTGATGGTTGAACTGGGTATGCTTCTCGAAAGCTGCCGCTTCACTT 1631 Query 1005 TTAGTTTTAAATTTCCGCCTGATACGTTTTCCATCTGCACCCTGC-GGTCTGACGTCCAC 1063 || | | ||| |||| | |||||| ||||||| ||| || || || |||| |||||| Sbjct 1632 TTCTTATCAAACTTCCTGCGGATACGCTTTCCAT-TGCGACCAGCAGGCCTGATGTCCAC 1690 Query 1064 TTCATAACGACCATCATCGAGCTTTTTAATAGACAT---AAAGCCCTCCGATGACGCTGT 1120 | |||| |||||||||||||| || ||||||| ||| ||| |||||||||| || Sbjct 1691 TCCATATCGACCATCATCGAGTTTCTTAATAGTCATAAGAAAACCCTCCGATGGGTGCGT 1750 Query 1121 TTACTTCTA---CT--AC---TTGAAAAT---TAATGCAATTTTCTTTCGTACATTTACT 1169 || | | || || || ||| || | | ||| ||| | ||||| || || | Sbjct 1751 TTGCCTTTAGGCCTTAACGCGTTGCAATTATGTGATG-AATACT-TTTCG-ACCAATAAT 1807 Query 1170 ACACA---CATATG-CTGAA-------TAAATCGTCAGCCAGTCTTCTGGTCTGAGTGGT 1218 | ||| | ||| || | | ||| || | |||||||| ||||||||||| | Sbjct 1808 AGACATTTGAAATGTATGTAAGCCTGGTTAATTGTTAACCAGTCTTTTGGTCTGAGTGCT 1867 Query 1219 GCAAGGTTGTTGAGTCTTGCCCAATGTGTGCGAGAGCCGGGGCTATTTGTCC 1270 || |||||||| |||||||||||| ||||||||| ||||| || ||||| || Sbjct 1868 GCGAGGTTGTTAAGTCTTGCCCAAAGTGTGCGAGGGCCGGTGCGATTTGACC 1919 Score = 100 bits (110), Expect = 5e-17 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 131 CACCGGGTTAAGAGTCACAGCATCTTGTAAGAAATCC-GGTGCAAAGTGTGCGTAGGTCA 189 || ||||||||| | | || || || |||| || | ||||||||||| ||||||| || Sbjct 764 CAGCGGGTTAAGCGAGATCGCGTCCTG-AAGATATTCAGGTGCAAAGTGAGCGTAGGCCA 822 Query 190 TAGTTTGCTGAATGTTAGAATGACCCAGGATGCGCTGCAATGTGATTATGTTACCTCCAT 249 ||||||||| ||| | ||| || | ||| | ||| ||||| |||||| | || |||| Sbjct 823 TAGTTTGCTCAATTCGCGCATGTCCTAAGATCCTCTGTAATGTAATTATGCTCCCCCCAT 882 Query 250 TCATTATAAAATGTGTGGCAAATGTATGCCTCAAAACATGTACTGCTTGTCCGTCAGGTA 309 | || |||||||| || || || | || | | |||| || || ||| || | Sbjct 883 TAATCATAAAATGCGTCGCGAAACTGTGGCGTAGTGCATGCGTCGCCTGGCCGGTCGGAA 942 Query 310 AATCGGGTTTTACTTCCCTGAG 331 ||| |||||||| |||||||| Sbjct 943 GATCAGGTTTTACCTCCCTGAG 964 >seq264 Length=5517 Score = 131 bits (144), Expect = 3e-26 Identities = 244/351 (70%), Gaps = 13/351 (4%) Strand=Plus/Minus Query 7059 GAGCGCCACCAGTGCCGGCGCGCCTCCGGTGTATTCGTGCACCTGCATTAAAACCGACCC 7118 || |||| |||| || |||| | |||| || | ||| |||||||||| ||||||| Sbjct 345 GATCGCCGCCAGAGCTGGCGTGGATCCGATGATCTGTTGCTCCTGCATTAATTCCGACCC 286 Query 7119 ATAAAGCGGGCAGGCGAGGCGGGGATAGCACTGCGCGCTGGCG--GTGGTGCTGATTTTA 7176 | |||||||||||||||||||||| |||||||||||| ||| | ||| | |||| Sbjct 285 ACGAAGCGGGCAGGCGAGGCGGGGAAAGCACTGCGCGCCAGCGTACTTTTGC-GCATTTA 227 Query 7177 TTTTTTCAGCGTCTGAGCGCGTCGTGATGGCGTTTAGATTGTTCGCCGGGGCGTTGGTGT 7236 |||| |||| |||||||||||| || || | |||||| ||| || |||| Sbjct 226 TTTTCGCAGC--CTGAGCGCGTCGCTGTGCCG---CGCGGGTTCGCGAGGGTGTCGGTGG 172 Query 7237 GT-CTGCGGGATGTTTTGTGCG-GTGGTGAGCGTGTGAGGGCGTGATGACAGGGTGT--- 7291 || || ||| || | | | || | | || | |||| || | | ||| || Sbjct 171 GTGGTGTGGGCGCGTTCGAGAGCGTAGCGGGCTTCTGAGACGGTCAGGTGTGGGGGTAAG 112 Query 7292 AAAAAGCCGCCCGCAGGCGGCGATGTTCAGCCGTTGTCAGTGTCCAGTGAGTAGTTTTTA 7351 |||| |||||||| ||||||| |||| | | || || || || |||| |||| Sbjct 111 AAAAGGCCGCCCGGAGGCGGCAGAAATCAGTCACTTTCTGTATCGAGGTTGTAGCTTTTG 52 Query 7352 AAGCGGATGACCTCCTGACCGAGCCAGCCGTTTATTTCCCGAATCCTGTCC 7402 |||||||| | |||||||||| ||| |||| | ||| || |||| |||| Sbjct 51 AAGCGGATCAGCTCCTGACCGGCCCACGCGTTGACTTCGCGCATCCGGTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93430412251566