Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1155 1018 0.0 seq264 228 2e-55 >seq1155 Length=6594 Score = 1018 bits (1128), Expect = 0.0 Identities = 615/649 (95%), Gaps = 0/649 (0%) Strand=Plus/Minus Query 23600 CAACATGTTTGATTTTCAGATTTCCAAACATCCACACTATGACGAAGCGTGCCGGGCTTT 23659 ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| Sbjct 2540 CAACATGTTTGATTTTCAGGTTTCCAAACATCCCCACTATGACGAAGCATGCCGGGCTTT 2481 Query 23660 TGCGCAGCGTCACAACATGGCGAAGCTGGCCGAGCGTGCGGGTATGAACGTTCAAACGTT 23719 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 2480 TGCGCAGCGTCACAACATGGCGAAGCTGGCAGAGCGTGCGGGCATGAACGTTCAAACGTT 2421 Query 23720 ACGTAACAAGCTCAACCCGGAACAACCTCACCAGTTCACGCCGCCTGAATTGTGGCTGCT 23779 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 2420 ACGTAACAAGCTCAACCCGGAACAGCCTCACCAGTTCACGCCGCCTGAATTGTGGCTACT 2361 Query 23780 GACTGACCTGACCGAAGACTCAACCCTCGTTGATGGTTTTCTGGCGCAGATTCATTGCCT 23839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2360 GACTGACCTGACCGAAGACTCAACCCTCGTTGATGGTTTTCTGGCGCAGATTCATTGCCT 2301 Query 23840 GCCATGCGTGCCGGTTAATGAGCTGGCTAAAGACAAATTGCAGTCTTATGTCATGCGCGC 23899 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2300 GCCATGTGTACCGGTTAATGAGCTGGCTAAAGACAAATTGCAGTCTTATGTCATGCGCGC 2241 Query 23900 AATGCGTGAACTCGGCGAACTGGCAAGCGGTGCGGTATCTGATGAACGTCTGACCTCTGC 23959 |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 2240 AATGCGTGAACTCGGCGAGCTGGCGAGCGGTGCGGTATCTGATGAACGCCTGACCTCTGC 2181 Query 23960 CCGTAAGCACAACATGATTGAAAGCGTTAACGCTGGCATTCGCATGTTGTCATTGTCGGC 24019 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 2180 CCGTAAGCACAACATGATTGAAAGCGTTAATGCTGGCATTCGTATGTTGTCGTTGTCGGC 2121 Query 24020 ACTAGCGCTGCATGCACGTCTGCAGACTAATCCCGCTATGTCGAGCGTGGTCGATACCAT 24079 || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2120 GCTGGCGTTGCATGCGCGTCTGCAGACTAATCCCGCTATGTCGAGCGTGGTCGATACCAT 2061 Query 24080 GAGTGGTATTGGCGCATCGTTTGGTCTAATTTGAGGTGCGTATGCTGAAAGGTGAACCGT 24139 ||| |||||||||||||| || || || |||||||||||||||||||||| ||||||||| Sbjct 2060 GAGCGGTATTGGCGCATCCTTCGGGCTGATTTGAGGTGCGTATGCTGAAAAGTGAACCGT 2001 Query 24140 CATTCGCGTCTCTGCTCGTCAAGCAAAGCCCAGGCATGCACTACGGCCACGGCTGGATCG 24199 ||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||| Sbjct 2000 CATTCGCGTCTCTGCTCGTTAAACATAGCCCCGGCATGCACTACGGCCACGGCTGGATCG 1941 Query 24200 CAGGTAAGGACGGCAAGCGCTGGCACCCGAGCCACTCACAGTCCGAATT 24248 |||||||||||||||| |||||||||||||||| ||||||| | || || Sbjct 1940 CAGGTAAGGACGGCAATCGCTGGCACCCGAGCCGCTCACAGGCTGATTT 1892 Score = 737 bits (816), Expect = 0.0 Identities = 481/527 (91%), Gaps = 3/527 (1%) Strand=Plus/Minus Query 24534 AATTAAACAAAA--GAAATTATCTGGCGTAAACCCGCCGGGCTTCTTATTGCCCGAAACC 24591 |||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 1522 AATTAATCAAAACAGAAATTTAATGGCGTAAACCCGCCGGACTTCTTATTGCCCGAAATC 1463 Query 24592 AGGAGAATCAATTATGCGTAATACCGAAATCCGTAGTTTTAACACTGATAGTGATGCGCT 24651 |||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1462 AGGAGAGTTAATTATGCGTAATACCGAAACCCGTTCTTTTAACACTGATAGTGATGCGCT 1403 Query 24652 GGCCGTATTGCTGACCGATGCaaaaaaaGAAGAGCGTAAAGACCGCGCGCTCGCTGTTTC 24711 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1402 GGCCGTATTGCTGACCGATGCAAAAAAAGAAGAGCGTAAAGACCGTGCGCTCGCTGTTTC 1343 Query 24712 AATCCGTCTTGAGGCGCTGGCTATCCATATCACCAAAGAGGGTATGAGCGGCACCGAAGC 24771 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1342 CATCCGCCTTGAGGCGCTGGCTATCCATATCACCAAAGAGGGTATGAGCGGCACCGAAGC 1283 Query 24772 TGCCGAACTGCTGCGCCGTGAAGCAACCCGCTTTGAGAATGAATCACAGGAGCTGCACTA 24831 |||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1282 TGCCGAACTGCTGCGCTGCGAAGCCACCCGCTTTGAGAACGAATCACAGGAGCTGCACTA 1223 Query 24832 ATGGCCGACGCAATGGATTTAGCACAACTGCGCGAGCAGGAAGACCGCGAACGCCACATA 24891 |||||||||||||||||||||||||||| ||| ||||||||||||||||| || || || Sbjct 1222 ATGGCCGACGCAATGGATTTAGCACAACAGCGTGAGCAGGAAGACCGCGAGCGTCATATC 1163 Query 24892 AGCAACGCGCGCAGCCGTATCGCTGCGCCTTCCCGTTTTCTATGCGAAGAGTGTGACGCA 24951 |||| || ||||||||||||||||| |||||||||||||| ||||| || |||||| | Sbjct 1162 AGCATTGCACGCAGCCGTATCGCTGCACCTTCCCGTTTTCTTTGCGAGGAATGTGACACC 1103 Query 24952 CCAATCCCGGAAGCTCGCCGCATTGCGATTCCGGGCGTGGCCTTTTGCGTGACCTGCCAG 25011 ||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 1102 CCAATCCCGGAGGCTCGCCGTATTGCGATTCCGGGTGTGGCCTTTTGCATGACCTGCCAG 1043 Query 25012 CAAATCGCTGAACTCAAGTCAAAACATTACAGGGGCGTATAA-ATGG 25057 ||||||| |||||||| |||||||||||||| || || ||| |||| Sbjct 1042 CAAATCGAAGAACTCAAATCAAAACATTACAGAGGTGTTTAATATGG 996 Score = 179 bits (198), Expect = 7e-41 Identities = 155/193 (80%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 25052 AAATGGGTATTCGTATCGAAGTCGGCGATAAATGGGTAATTACCAGCGACCAGTATCAAT 25111 ||||| | | || || | | | || || |||||||| |||||||||||||| ||||||| Sbjct 297 AAATGAGCCTCCGCATTGTAATAGGTGACAAATGGGTTATTACCAGCGACCAATATCAAT 238 Query 25112 TCATCCTGAATGAAAAGAAAGTCGTTAAGTCAGGTAATAAAGCTGGCGAGGAATGGCTCG 25171 ||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| Sbjct 237 TCATCCTGAATGAAAAGAAAGTCGTTAAGTCCGGTAAAAAAGCTGGTGAAGAATGGCTC- 179 Query 25172 ACATTATCGGATATTACCCGAAGATTAACCAGCTTATTTCCGGTCTGGCACATCACTACA 25231 ||| ||||| |||||||||||||||||||||||||| ||| ||| || | | Sbjct 178 -------CGGCTATTATCCGAAGATTAACCAGCTTATTTCCGGCCTGATACACCATCAGA 126 Query 25232 TCCATAATTCGGA 25244 | ||| ||||| Sbjct 125 TTCATGGCTCGGA 113 >seq264 Length=5517 Score = 228 bits (252), Expect = 2e-55 Identities = 257/336 (76%), Gaps = 16/336 (5%) Strand=Plus/Minus Query 29405 ATAAAAGGAACCATATAAATATGTTATCTCTCGTTTATGAAAATCCGTGGACAACCGTTT 29464 ||||||||| | ||| |||||||||||||| |||||||||| ||||||| |||| |||| Sbjct 600 ATAAAAGGATCTTTATCAATATGTTATCTCTTGTTTATGAAAGTCCGTGGGCAACTGTTT 541 Query 29465 TTCTGCTGATTGTTGCGAGCTGTTGTCTCAACAGTATTATTGGCGCATTGCGCGGCCAGT 29524 |||| || ||||| | ||| || ||| |||||||||| || ||| ||| ||||||| Sbjct 540 TTCTACTAATTGTGTCCAGCATGTGCTTCAGCAGTATTATTTGCACATAGCGTGGCCAGT 481 Query 29525 AACCTTAATAAACCTGATTCAAACCGGCACCATGAATGCCGGtttttttatgccattttt 29584 | ||| | | | || | |||||||||| |||||||||| |||||||| |||||| Sbjct 480 GA-CTTCACAGAAGCGACCCTAACCGGCACCCTGAATGCCGG-TTTTTTATACCATTTCC 423 Query 29585 ccgcgaatttcccgttttttAGCCGTGCATGCAACAGGTGCATGGTTTTGCATGCGTCAG 29644 | || | ||| |||||| |||| | |||||||| | |||||| || |||||| || Sbjct 422 CTGCAATTTTTCCGTTTCTTAGTCCTGCATGCATTAAGTGCATCATTCTGCATG---CAA 366 Query 29645 ACTTTCCCGTTC-----TGGCCGTTCGCCGCCAGAGCTGGCGCGGATCCAGATTGGTC-- 29697 |||||||| || | | || |||||||||||||||||| |||||| || || || Sbjct 365 ACTTTCCC--TCAAAATTTGACGATCGCCGCCAGAGCTGGCGTGGATCC-GA-TGATCTG 310 Query 29698 ATGCAACTGCATTAAAACCGACCCATAAAGCGGGCA 29733 ||| ||||||||| |||||||| ||||||||| Sbjct 309 TTGCTCCTGCATTAATTCCGACCCACGAAGCGGGCA 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95017503743630