Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq567 132 1e-25 >seq567 Length=338301 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||||| || | ||||| || || ||||| ||||| |||||||| ||| || Sbjct 136083 ACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGT 136142 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||| ||||| || || || | ||||| || ||||||| ||| Sbjct 136143 ACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCC 136202 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||||||| |||||||| ||||| | || | | ||| | || || || || Sbjct 136203 TTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTC---GTTTGGCTCCACATC 136259 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| ||||| || || ||||| | ||||| Sbjct 136260 CAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 114 bits (126), Expect = 3e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| || ||||| ||||| ||||| || ||| || | ||||| Sbjct 137938 AGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTAAGAGTGCGACCATCC 137997 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| |||||||| || || | |||||||| || |||| ||||||||||| Sbjct 137998 TCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGAATACCTTCCTTGTCT 138057 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGG---TGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| ||| ||| | |||| | ||||| || || || |||||||| || Sbjct 138058 TGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAG-GC--TCTACATCGAGAGTTATA 138114 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||||| ||||| | |||||| Sbjct 138115 GTTTTGCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| || ||||| |||||||||||||| ||| || | ||||| Sbjct 137254 AGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTAAGTGTGCGACCATCC 137313 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || || || || | ||||| |||||||||| |||||||||||| Sbjct 137314 TCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCT 137373 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || | |||| | ||| | ||||| || || |||||||| Sbjct 137374 TGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGATCGTT 137433 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | ||||| Sbjct 137434 TTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||| || || || ||||| ||||||||||| || || || | ||| Sbjct 137023 CTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCA 137082 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||| || ||||| || || || || || | || || || || |||| |||||||||| Sbjct 137083 TCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTG 137142 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || || | || | | |||| | ||||| ||||||||||| Sbjct 137143 TCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATT 137202 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || || || | ||||| Sbjct 137203 GTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||| || || || ||||| ||||||||||| || || || | ||| Sbjct 137707 CTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCA 137766 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||| || ||||| || || || || || | || || || || |||| |||||||||| Sbjct 137767 TCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTG 137826 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || || | || | | |||| | ||||| ||||||||||| Sbjct 137827 TCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATT 137886 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || || || | ||||| Sbjct 137887 GTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||| |||||||| || || ||||| || ||||| | || | ||| Sbjct 137479 CTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCA 137538 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || || ||||| || |||||||| || || | ||||| || || |||| |||||||||| Sbjct 137539 TCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTG 137598 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || ||||| ||| || | || | | ||| | || || || ||||| || Sbjct 137599 TCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATT 137658 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || | || || || || | ||||||| Sbjct 137659 GTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159066499137305