Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq567 86.0 5e-12 >seq567 Length=338301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || | ||||| || || || ||||| | Sbjct 137224 ACGAAAATTTG--CATACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCT 137281 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||||||| |||||| || | || || | ||||| || ||||| || || | Sbjct 137282 GGATGTTATAATCGCTAAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTC 137341 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||| || || | || | | || ||||| |||||| || | ||| | || | Sbjct 137342 TCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAG 137401 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 ||| | | ||| || || | ||||| |||| || || || |||||||||||||||| Sbjct 137402 AATCATTGGGCTCAACATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTT 137461 Query 39281 GCAT 39284 |||| Sbjct 137462 GCAT 137465 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39072 TAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTC 39131 ||| || ||||| || || ||||| || |||||||||||| ||| || || | || Sbjct 136092 TAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGTACGACCATC 136151 Query 39132 ATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 || | || || || ||||| || || | ||| || |||| || | | || ||||| Sbjct 136152 CTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTC 136211 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || || | ||| | || | ||| | | |||||| |||| ||||| | Sbjct 136212 TTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGATCGT 136271 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || || ||||| ||||| |||||||| Sbjct 136272 TTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515461604141