Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq567 132 3e-26 >seq567 Length=338301 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||| | || || || || || ||||| || || || ||| Sbjct 137694 AATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAA 137635 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||||||| | ||||| || ||| ||||| ||||| | || |||||||| Sbjct 137634 CGACTCTGTTGAGACGGTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 137575 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || || || ||||| || || || | ||||||||| |||||||||| Sbjct 137574 ACAGAGACTGATTTTCGCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAA 137515 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| | || || ||| | |||||| | || || Sbjct 137514 TATCCAGAAGGAATCCACTCTCCACTTGGTTCTTAGGTTGAGGGGTGG 137467 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 137237 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137178 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||||||| | | |||| | || || ||||| ||||| | || || ||||| Sbjct 137177 GACTCTGTTGAGACTGTTAAGTC-TAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 137119 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || ||||| ||||| | |||||| | | || || || Sbjct 137118 GCAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAA 137059 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || || | || || ||| | |||||| |||| ||| Sbjct 137058 CATCCAGAAAGAATCTACCCTCCACTTGGTTCTTAGGTTGAGAGGTGGA 137010 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 137921 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137862 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| ||||||| | | || || || ||||| ||||| | || || ||||| Sbjct 137861 GACTCTGTTGAGACTGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137802 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || ||||| ||||| | |||||| | | || || ||| Sbjct 137801 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137742 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | || || ||| | |||||| |||| ||| Sbjct 137741 ATCCAGAAAGAATCTACCCTCCACTTGGTTCTTAGGTTGAGAGGTGGA 137694 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| ||||||||||||||||| || || || | | Sbjct 136304 ATGCAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAAC 136245 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| ||||||| | | || || || ||||| ||||| | || || |||||| Sbjct 136244 GACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAA 136185 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || ||| |||| || | || || | ||||||| || Sbjct 136184 CAGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGCGATTATAAT 136125 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| || ||| | |||||||||||||| Sbjct 136124 ATCCAGAAAGAATCTACACTTCATTTAGTTTTAAG 136090 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| || || || ||||||||||| || || ||||| ||| Sbjct 137465 ATGCAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAAT 137406 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || |||| || | |||| ||||| ||||| ||||| | || || |||||| Sbjct 137405 GATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAA 137346 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| |||||| |||| || | ||||| | ||||||| ||| Sbjct 137345 CAGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCGCACACTTAGCGATTATAAC 137286 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | || || ||| | | ||| |||| || Sbjct 137285 ATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGG 137239 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||| | || || || || || ||||| || || || ||| Sbjct 136533 AATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAA 136474 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||||||| | | || || ||| || || ||||| | || || ||||| Sbjct 136473 CGACTCTGTTGAGACTGTGAAGTCTAAGATTCAAGATAAGGAAGGAATTCCCCCTGATCA 136414 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| || || || ||||||| |||||| | | || || || Sbjct 136413 ACAGAGACTGATTTTTGCCGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGTGACTATAA 136354 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || |||||| | |||||| | || || Sbjct 136353 TATCCAGAAGGAATCTACTCTCCACTTAGTTCTTAGGTTGAGGGGTGG 136306 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||| | || || || || || ||||| || || || ||| Sbjct 137010 AATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAA 136951 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||||||| | ||||| || ||| ||||| ||||| | || |||||||| Sbjct 136950 CGACTCTGTTGAGACGGTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 136891 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACA 23756 |||| | | || || || || ||||| Sbjct 136890 ACAGAGACTGATTTTCGCAGGAAAACA 136864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985884084556