Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4076 251 1e-61 seq3622 145 1e-29 >seq4076 Length=468004 Score = 251 bits (278), Expect = 1e-61 Identities = 934/1445 (65%), Gaps = 33/1445 (2%) Strand=Plus/Minus Query 77118 TTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGT 77177 || || | ||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 77178 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACC 77237 || || ||||||||||| || ||||||| || || ||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 77238 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAA 77297 |||| ||| || | | |||| | || || || || || | | ||||||||| Sbjct 422163 AATAGACTGTTACGTAAGCCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCAT 422104 Query 77298 AGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGAT 77357 | |||||| ||| || |||| | ||||||||| ||||| || | ||| || || Sbjct 422103 AAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGAG 422044 Query 77358 CCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT-AGTTCACAACTCGCTTCCAATGC 77416 || | ||| ||||||||||| || | ||| ||| | ||| || | || | || Sbjct 422043 CCTTCATAAGTTTCATAAGGACCAT-GCTTTTGGCTCAATTCGCATGAAGACTCAAGGGC 421985 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 | | ||| ||||| || ||||| || ||||| || || || ||||| ||| || Sbjct 421984 AGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGAA 421925 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 |||||| | | || | | | ||||| || || || ||||| || || ||||| ||||| Sbjct 421924 AGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTCT 421865 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATG-TCTATAATTT 77595 ||| | |||| || || |||||| |||| ||| ||| || | | || || | || Sbjct 421864 ATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAA-AACGAGCGATCAATGACTT 421806 Query 77596 TATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTC 77655 | || | ||| | || | |||| | || | ||||| |||| || | Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 77656 CATCT-ATAA-CAAACATGTTCAA-AGCTATA-GATGC----TAGATTACAAACTGC-TA 77706 || | |||| || |||| | | || || || | || ||||| ||| | Sbjct 421745 GATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 77707 CCTCATTAGCGTTGGCAT-ATTGTATT-----ATCTCGGTACATAGATTACTACATTTGA 77760 | || | | |||| || |||||| |||||||| ||||||||||| |||||| Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACG 77820 | || || || | |||||| || || || ||||| | || || || | |||||| | Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 77821 GAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCA 77880 | || ||||| || || | || | || || ||| | | ||||||| Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 77881 TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 | | | || |||| ||| || | |||| |||| || ||||| ||||| Sbjct 421505 TCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTCCGT 421446 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 || || | || || ||| ||| || ||||||| ||||||| || ||||||| Sbjct 421445 AACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTCTTCCT 421386 Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 ||||| |||||| || | ||| || ||||| ||||| | ||||| ||| | || ||| Sbjct 421385 CAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGCCCTAA 421326 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||| || ||| |||||||| | || || || || || | |||||||| ||||| | Sbjct 421325 CTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTGCCAGG 421266 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGG 78180 |||| ||||| || || | | ||| || | || ||||| || ||||| | || | || Sbjct 421265 GTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTAACGGG 421206 Query 78181 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240 | ||| || | || || | |||||| | | ||||||||| || || ||||||| Sbjct 421205 ATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGTTCCAG 421146 Query 78241 AAATATAACTTCCACTTGCGCGAATAT--TACTAATGGATATCCCTATTCCTCCTGCCAT 78298 ||| | ||| || ||||| | | | ||| || ||| ||||| || || Sbjct 421145 CTATAAATGAACCAGAGGCTCGAATGTTGTGCACATG--TAACCCGATTCCACCAGCATA 421088 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 |||||| || ||||| ||||||| ||| | ||||||| || |||||||| | Sbjct 421087 CTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATCTTT 421028 Query 78359 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT----CCTGCATTAAATA 78414 |||| || | || || |||| || || |||||| || ||||| || | Sbjct 421027 CATGGCAATCAAGAAGCAACTAGCCAACTG----GCCACAGTTCGAACCAGCATTGAACA 420972 Query 78415 ATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTG 78474 ||||||| | || || || | | |||||| | || | ||| || | |||| Sbjct 420971 ATGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTT 420912 Query 78475 ATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTT 78533 ||| || || || | || ||| | || || || | ||| | |||||| || ||||| Sbjct 420911 GTTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTC 420853 Query 78534 TCAAC 78538 || || Sbjct 420852 TCGAC 420848 >seq3622 Length=296610 Score = 145 bits (160), Expect = 1e-29 Identities = 476/733 (65%), Gaps = 74/733 (10%) Strand=Plus/Minus Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||||||||| || || || || ||||||||||| ||||| ||||||| ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttt-tAAA--------TCCTAATT 47961 |||| ||||| |||||||| | ||||| | || | | |||| | || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 47962 CTGAA------------ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTT 48009 | || || || | ||| || || || || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 48010 CACA---ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGA 48066 || ||||||||| || | | || ||||| || || || | |||||||| ||||| Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 48067 TAGTGACAGCATCCACTATTATCGATGTTACC---GTTTCCTCACTTGGTGGATACAAC- 48122 | || |||||||| || || | ||| | || || ||| | || Sbjct 278402 TTTCAACTGCATCCACAATAATTCTTTGAACCAGAGATTG------TGATGGTTTCACGG 278349 Query 48123 --AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTA 48180 ||||| ||||||| || ||||| |||||| |||||| || ||||| || || || | Sbjct 278348 TTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGA 278289 Query 48181 ATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCG 48240 ||| ||| || | | || ||||||| ||||| ||||| | |||||| || || | Sbjct 278288 GTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAG 278229 Query 48241 CGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGT 48300 | || || ||||||||||| || ||||| || | ||||| || | ||| | || Sbjct 278228 CAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGT 278170 Query 48301 AA-----CT------GG------------CTTCGTTG-TGTATCCACCGTTGTGCCCAAT 48336 || || || || | ||| | ||||| | ||||||| Sbjct 278169 AAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAAT 278110 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt---tt 48393 |||||| || ||||| || | ||||| | |||| |||| || || | || Sbjct 278109 TAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAG---AACTTCATACGTT 278053 Query 48394 CATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTT 48453 ||| ||||||||||||| || || || |||||||| ||||| || || |||| |||| Sbjct 278052 CATCTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTT 277993 Query 48454 CAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAA 48512 ||| |||| ||| |||||||| ||| | | ||||| | | || |||| || ||| Sbjct 277992 CAACAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCTCG--CAA 277935 Query 48513 AATCG-TTCAGCC 48524 || || ||||||| Sbjct 277934 AAACGTTTCAGCC 277922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694618809896480