Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq567 118 2e-21 >seq567 Length=338301 Score = 118 bits (130), Expect = 2e-21 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| ||||| ||||| || || ||| | ||| | ||||| || | Sbjct 137943 CAAG-TGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTAAGAGTGCGACCATCCTCAA 138001 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || ||||| || || ||||| ||||| | || || |||||||| ||||| Sbjct 138002 GTTGCTTT--CCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGAATACCTTCCTTGTCTTG 138059 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| ||||| || || | |||||| || ||||| |||||||| Sbjct 138060 AATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTACATCGAGAGTTATAGTTTT 138119 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | |||||||| || | |||||| Sbjct 138120 GCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || ||||| ||||||||| |||||| | ||||| || | Sbjct 137487 CAAG-TGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCATCCTCAA 137545 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| || || ||||| || || | | ||||||||||| ||||||| Sbjct 137546 GCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAA 137605 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| || ||||| || ||| ||| || || |||||||| || || | Sbjct 137606 TCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTAC 137665 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | || |||||||| | ||||||| Sbjct 137666 CGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 100 bits (110), Expect = 7e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCATCTTCT 151955 |||| || |||||||| ||||| |||||||| |||||| |||| || | ||||| || Sbjct 137259 CAAG-TGGAGAGTAGATTCTTTCTGGATGTTATAATCG-CTAAGTGTGCGACCATCCTCC 137316 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||||||||| || || || ||||| || || | | ||||||||||| ||||| Sbjct 137317 AATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGG 137376 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || |||||||| || || ||| || ||||| || || |||||| Sbjct 137377 ATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACATCAAGGGTGATCGTTTTG 137436 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||| ||||| Sbjct 137437 CCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 100 bits (110), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || ||||| ||||| |||||||| || || | ||| | |||||||| | Sbjct 137715 CAAG-TGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAA 137773 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| || || || |||||||| |||| | ||||||||||| || || Sbjct 137774 GTTGCTTT--CCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTG 137831 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||||||||| || ||| ||| || || ||||| || ||||| Sbjct 137832 GATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTT 137891 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| | ||||| Sbjct 137892 ACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || ||||| ||||| |||||||| || || | ||| | |||||||| | Sbjct 137031 CAAG-TGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAA 137089 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| || || || |||||||| |||| | ||||||||||| || || Sbjct 137090 GTTGCTTT--CCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTG 137147 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || |||||||| || ||| ||| || || ||||| || ||||| Sbjct 137148 GATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTT 137207 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| | ||||| Sbjct 137208 ACCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCT 151945 ||||| | || | |||||| ||||| ||||| ||||| || |||||| |||| || | Sbjct 136087 AGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCG-CTAAGCGTACG 136145 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || | ||||| || || || || ||||| || || | | |||||||| Sbjct 136146 ACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTC 136205 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || |||||||| || ||| ||| || || ||||| Sbjct 136206 CTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGT 136265 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || || || | ||||| Sbjct 136266 GATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || |||||||| || || ||||| || || || | ||| | || ||||| || Sbjct 136330 TGGAGAGTAGATTCCTTCTGGATATTATAGTCACTCAGAGTGCGGCCGTCTTCAAGCTGC 136389 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| || || || ||||| || || | | ||||||||||| |||||||| || Sbjct 136390 TTACCGGCAAAAATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATCTTA 136449 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || |||||||| || ||| ||| || || |||||||| || || || || Sbjct 136450 GACTTCACAGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCGGTT 136509 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| | ||||||| Sbjct 136510 AAGGTTTTCACGAAAATCTGCATT 136533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153735692374947