Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq567 140 7e-28 seq4020 93.3 9e-14 >seq567 Length=338301 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||||| |||| || | || |||||| ||||| || ||||| | Sbjct 137923 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTA 137982 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || || || || || | | |||||||| |||| Sbjct 137983 AGAGTGCGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGGA 138042 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| ||||| | ||| ||||| |||| | || || || || Sbjct 138043 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTACA 138102 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || || || || ||||| ||||| || ||||||||||| Sbjct 138103 TCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCAT 138149 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||| || | || |||||| |||||||| || || Sbjct 137238 ACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCT 137297 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| | ||||||||||||||| |||| | ||||| ||| || Sbjct 137298 AAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGG 137357 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||| || | ||||| || |||| || || | || || Sbjct 137358 AATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAAC 137417 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| || || || | || ||||| || || ||||| Sbjct 137418 ATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| |||||||| |||||| || ||||||||||| || ||||| || |||||||| Sbjct 137046 TTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAA 137105 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | || || || ||||| || |||||||| |||||||| | || || || Sbjct 137106 AATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGT 137165 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | || ||| | || || ||||||||||| || ||||| || | || || || Sbjct 137166 CTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGAC 137225 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 137226 GAAAATTTGCAT 137237 Score = 116 bits (128), Expect = 8e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||| |||| || | ||| ||| || ||||| ||||| || Sbjct 137466 ACCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCT 137525 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || ||||| || || || |||| | ||||| || || Sbjct 137526 TAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGG 137585 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | |||||| || || | || ||| | || || Sbjct 137586 AATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCAC 137645 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || |||||||| || || || || ||||| ||||||||| Sbjct 137646 ATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| |||||||| |||||| || ||||||||||| || ||||| || |||||||| Sbjct 137730 TTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAA 137789 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | || || || ||||| || |||||||| |||||||| | || || || Sbjct 137790 AATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGT 137849 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | || ||| | || || ||||||||||| || ||||| || | || || || Sbjct 137850 CTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGAC 137909 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 137910 GAAAATTTGCAT 137921 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| ||||| || || || |||||| || |||||||| | ||| ||||| ||||| Sbjct 136113 TTCTTTCTGGATATTATAATCGCTAAGCGTACGACCATCCTCCAATTGCTTCCCTGCAAA 136172 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | ||||| || ||||| || ||||||||||||||||| | || || || Sbjct 136173 AATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGT 136232 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | || ||| | || || || ||||||||||| || || || | || || || Sbjct 136233 CTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGAC 136292 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 136293 AAAAATTTGCAT 136304 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 ||||| || || || |||| | ||||| || ||||| || ||||||||||| ||| Sbjct 136864 TGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGAATC 136923 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || | |||||| || || | || ||| | || || || ||||| || |||||||| Sbjct 136924 TTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTTACCG 136983 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || ||||| ||||||||| Sbjct 136984 GTTAAGGTTTTCACGAAAATCTGCATT 137010 >seq4020 Length=170181 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 108938 TTAGTATAGCGGTAAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCGATTCCCCGA 108996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046661990881078