Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq567 140 8e-28 >seq567 Length=338301 Score = 140 bits (154), Expect = 8e-28 Identities = 159/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || | ||| || | Sbjct 137918 CAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTG--AGCCCAATG 137861 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | | |||| ||||| ||||| |||||||| |||||||| || ||||| |||| Sbjct 137860 ACTCTGTTGAGACTGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAGC 137801 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || |||||||| || || |||||||| | ||||| || |||||| Sbjct 137800 AGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAACA 137741 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| |||||||| || || || |||| || Sbjct 137740 TCCAGAAAGAATCTACCCTCCA-CTTGGTT 137712 Score = 136 bits (150), Expect = 1e-26 Identities = 158/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || | ||| || | Sbjct 137234 CAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTG--AGCCCAATG 137177 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | | |||| || || ||||| |||||||| |||||||| || ||||| |||| Sbjct 137176 ACTCTGTTGAGACTGTTAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAGC 137117 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || |||||||| || || |||||||| | ||||| || |||||| Sbjct 137116 AGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAACA 137057 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| |||||||| || || || |||| || Sbjct 137056 TCCAGAAAGAATCTACCCTCCA-CTTGGTT 137028 Score = 129 bits (142), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 |||||||| || ||||| ||||| |||||||||||||| || || |||| ||| | | Sbjct 136301 CAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGG--AGCCAAACG 136244 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | | |||| || || ||||| || ||||| |||||||| ||||| || || | Sbjct 136243 ACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAAC 136184 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || || || || || | || ||||| | || ||| ||||||||| Sbjct 136183 AGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGCGATTATAATA 136124 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| |||||||| ||||| ||| | ||||| ||||| Sbjct 136123 TCCAGAAAGAATCTACACTTCATTTAGTTTTAAGACT 136087 Score = 113 bits (124), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || || ||||| || || || |||||||||||||| || || | ||| || | Sbjct 137462 CAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTG--AGCCCAATG 137405 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | |||||| || || || || || ||||| |||||||| ||||| || || | Sbjct 137404 ATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAAC 137345 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || ||||| ||||| | || ||||| | || ||| |||||||||| Sbjct 137344 AGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCGCACACTTAGCGATTATAACA 137285 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| |||||||| || || || |||| || Sbjct 137284 TCCAGAAAGAATCTACTCTCCA-CTTGGTT 137256 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| | || || || || || || || || ||||| || || | Sbjct 137690 CAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGA--GCCCAACG 137633 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | | |||| || ||| |||||||| ||||| |||||||| || || || || | Sbjct 137632 ACTCTGTTGAGACGGTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAAC 137573 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || ||||| ||||||||||| || ||||| | ||| | |||||| || Sbjct 137572 AGAGACTGATTTTCGCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAATA 137513 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| || ||||| || || || |||| || Sbjct 137512 TCCAGAAGGAATCCACTCTCCA-CTTGGTT 137484 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| | || || || || || || || || |||| ||| || | Sbjct 136529 CAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGG--AGCCCAACG 136472 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | | |||| || || |||||||| || || |||||||| || || || || | Sbjct 136471 ACTCTGTTGAGACTGTGAAGTCTAAGATTCAAGATAAGGAAGGAATTCCCCCTGATCAAC 136412 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || ||||| || ||||| ||||| || | ||||| || ||||| Sbjct 136411 AGAGACTGATTTTTGCCGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGTGACTATAATA 136352 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| || ||||| || || || Sbjct 136351 TCCAGAAGGAATCTACTCTCCA 136330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642410905858