Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1402 98.7 1e-15 >seq1402 Length=1917717 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||||||||||| || |||| || | | || | || || || ||||| | | Sbjct 1405219 TCCAGGCGTAAAAATGCATGCTGGTTAACTTCGCAAAATTGGGCTCAGCAATATGTACGT 1405160 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | |||||||||||||| ||| | ||||||| || || ||||| | || | || Sbjct 1405159 TAAATGATTGACTTTGATCAATGTAAGCTCCCCGATCAGCTGCCATATCGATCAAGGTTC 1405100 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT 53049 |||| | ||||||||| | |||||||| ||| | |||||||| ||||| | ||| Sbjct 1405099 TTTGAGAAATTTCCCATACGGTTTTATATAACGC-TTTAATATCATCTGGTATGTT 1405045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 |||| |||||||||||| ||| ||||||||||||||||||| | ||| | | | | Sbjct 1402340 CCTCAATACTATCATCCGACATTGTAAGTAGAAAACAGCTAGATAATTGAGGTCTGCAGG 1402281 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | || |||||||| | || || |||||||| |||||||| ||| || | || ||| | Sbjct 1402280 TACCAGCATTAAAAAGCGTTGGCGAAGCGTGTGTAAACCAACGTTCGGACATTAAATTAT 1402221 Query 54486 ACGTCT 54491 | |||| Sbjct 1402220 ATGTCT 1402215 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || |||||||| ||||| || | | || |||||||| || |||||||| || | Sbjct 1404668 ACCTGGAATTCTCCTGACAAAACACGTCTAGAATAAATATTGCTTGTATACGGCTCAATT 1404609 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || || ||||| || | ||||||||||| || || || ||||| || || | | ||| Sbjct 1404608 GATTCGTTATTACCAAGGATTTGAGCAGTAGAAGCCGTTGGCATTGGAGCTAATAGTAAG 1404549 Query 53270 CTATTTC-TAAG 53280 ||||||| |||| Sbjct 1404548 CTATTTCGTAAG 1404537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711105970720