Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1375 145 1e-29 >seq1375 Length=284262 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || || ||||| || || | || | ||| ||| | Sbjct 62729 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62670 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 62669 GATACTATCGAAAATGTCAAATCAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62610 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || || |||||||| ||| | || ||| || || ||||| Sbjct 62609 CAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTAAGCGACTATAAC 62550 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | ||||| || ||||| | || |||||||| Sbjct 62549 ATCCAAAAAGAATCCACACTTCATTTAGTGCTACGTCTTCGTGGTGGTAT 62500 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| |||| || ||||| || || |||| | ||| ||| | Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || || ||||| || ||| | || || || || ||||| Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | ||||| || | ||| | || ||||| || Sbjct 62777 ATCCAAAAAGAATCCACTCTTCATTTAGTGCTTCGTCTTCGTGGTGGGAT 62728 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||| |||||||| || || |||| | ||| | | | Sbjct 63413 ATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAGT 63354 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 63353 GACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAG 63294 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| |||| ||| |||| || | ||||| || Sbjct 63293 CAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTACAAC 63234 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | ||||||||||| || ||||| |||||||| Sbjct 63233 ATCCAGAAAGAATCGACACTTCATTTGGTTTTGCGCTTACGTGGTGGTAT 63184 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || |||| || ||||| || ||| | || | ||| ||| | Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || |||||||| |||||||| || || || |||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || |||||||| || || | || |||||| ||||| ||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || ||||| || ||| | || |||||||| Sbjct 63005 ATCCAAAAAGAATCCACACTCCACTTGGTATTGCGTCTTCGTGGTGGTAT 62956 Score = 118 bits (130), Expect = 2e-21 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || || ||||| || || | || | ||| ||| | Sbjct 62501 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62442 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||||||||| |||||||| ||||| ||||| Sbjct 62441 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 62382 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || || || || || ||| |||| || || || || || Sbjct 62381 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAAC 62322 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT-ATTAAAAA 124774 || ||||| ||||| || | || ||||| | ||| | || |||||| ||||| || Sbjct 62321 ATCCAAAAGGAATCTACACTTCACTTGGTACTGCGTCTTCGTGGTGGTAATTAATAA 62265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442647315200