Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1375 163 2e-35 >seq1375 Length=284262 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | ||| ||||| || | ||| || ||||| || ||||||||||||| Sbjct 63185 TACCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGC 63244 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| |||||| ||| || |||||||| |||||| | || | ||| ||||||||||| | Sbjct 63245 TCAGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTG 63304 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| |||||| ||| || | ||| | |||||| || || | Sbjct 63305 GAATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCA 63364 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | ||||||||| || | ||| || |||||||| |||||| Sbjct 63365 CTTCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATG 63414 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||| || ||||| |||||||| ||||| | ||||| ||| || Sbjct 62293 ACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGACCATCTTCC 62352 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || |||||| |||||||||| |||||||| || || || || ||||| ||| | Sbjct 62353 AACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGA 62412 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||||| || || | || | ||||| || | ||| | ||||| Sbjct 62413 ATTTTGGATTTGACATTTTCGATAGTATCACTTGGT-TCGACTTCCAAGGTAATTGTTTT 62471 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 62472 ACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||||| ||| || |||||||| || |||||||||| Sbjct 62957 TACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGC 63016 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | || || || || | ||||| |||||| | || || ||||| ||||| |||| Sbjct 63017 TTAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAG 63076 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCG 118688 | ||||| || |||||| ||| ||| || || | ||| | ||| || | || | || Sbjct 63077 GAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGT-TCC 63135 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || | |||||| || ||||||||||| Sbjct 63136 ACTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| || || | ||| || |||||||| ||||| || ||||| | ||||| ||| || Sbjct 62520 CACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTC 62579 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || |||||| | || ||||| |||||||| || || || || || |||||| Sbjct 62580 TAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62639 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||||| ||| || | ||||| || || | || | ||||| || | ||| | |||| Sbjct 62640 AATTTTTGATTTGACATTTTCGATAGTATCACTTGGT-TCGACTTCCAAGGTAATTGTTT 62698 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || ||||||||||| Sbjct 62699 TACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433822923746488