Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1414 100 3e-16 seq1375 82.4 9e-11 >seq1414 Length=13260704 Score = 100 bits (110), Expect = 3e-16 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2400989 CTCCGTGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2400930 Query 60126 TACTACCGAGGATTGAATATATAACTTGAATATTACAAT 60164 ||||||| ||||| | | ||| | || ||| |||||| Sbjct 2400929 TACTACCACGGATTCAGT-TATTAGTTATATA-TACAAT 2400893 >seq1375 Length=284262 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | |||| || ||||| ||||||||||| | || || | Sbjct 62970 ACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCC 63029 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | || || ||||||||||| |||||||| || || | || | || || || Sbjct 63030 GTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTT 63089 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | |||| || | | | | || || || | |||||| || | |||| Sbjct 63090 GT-CTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGA 63148 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || |||| || || || || || ||||| Sbjct 63149 TGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807493123920