Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1375 116 3e-21 >seq1375 Length=284262 Score = 116 bits (128), Expect = 3e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 18069 AAAATTAAAAATACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGT 18128 |||||||| ||| ||||||| || | || || || || | ||||||| ||||||| Sbjct 62245 AAAATTAACAATTGGTTTTCTTATTAATTACCACCACGAAGACGCAGTACCAAGTGAAGT 62304 Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| |||||||||||| | || || ||||||||| || || || Sbjct 62305 GTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCA 62364 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| || | ||| ||||| || | ||||||||||| ||||| ||| Sbjct 62365 GCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTG 62424 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | | ||| |||| || ||| ||| | ||| || |||| || || | ||| Sbjct 62425 ACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTC 62484 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||| ||||| Sbjct 62485 TTGACGAAAATCTGCAT 62501 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| ||||| ||||||||||| || ||||| ||| | ||| | ||||| Sbjct 62976 TACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTCTTC 63035 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||||||| || | ||||||| |||||||| || | |||||| || || Sbjct 63036 CAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTG 63095 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||| | | ||| || | | ||| || |||| || || ||| | |||||| |||| Sbjct 63096 AATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGTTTT 63155 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||| ||||| Sbjct 63156 TCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||||| |||||||| || |||||||| ||| || || || |||||| Sbjct 63205 ACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCT 63264 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||| || | || | | ||| ||||| || | ||||| || || | Sbjct 63265 AGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCTTGA 63324 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||||| | | ||| ||||||| ||| || ||| | ||| || ||||| Sbjct 63325 ATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGTTTTG 63384 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || || |||||||||||||| Sbjct 63385 CCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| || ||||||||||| ||||| |||||| Sbjct 62731 CCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTT 62790 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| || || || | ||||| | ||| ||||| || Sbjct 62791 AGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGG 62850 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||||| | | | | ||| |||| || ||| | Sbjct 62851 ATACCTTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62910 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| |||| || || || || || ||||| || ||||| Sbjct 62911 TCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| ||||||||||| ||||| |||||| | ||| | |||||| ||||| Sbjct 62527 TGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTCTAATTGC 62586 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || || | ||| ||||| || | ||||| || || ||||| | Sbjct 62587 TTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTT 62646 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||||| | | | | ||| |||| || ||| ||| | ||| || |||| || || Sbjct 62647 GATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTTACCAGTG 62706 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||| || || ||||| ||||| Sbjct 62707 AGTGTCTTGACGAAAATCTGCAT 62729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379337462717430