Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1375 107 1e-18 >seq1375 Length=284262 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| |||| ||| || ||||| | |||||||||| Sbjct 62959 CCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTT 63018 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| |||| |||||||||||||| || || || | |||||||||||| | || Sbjct 63019 AATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGA 63078 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACT-----CTGCCAACTGTGTCGCCAGCCT 43057 | |||||||| || | | ||||||||| | ||| || || | | | Sbjct 63079 ATGCCTTCTTTGTC-----TTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTT 63133 Query 43058 CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || | || || |||||||| |||| |||||| || ||||| ||||| Sbjct 63134 CCACTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || || | ||| | ||| ||| || || | ||||| ||| Sbjct 63414 GCCGCCACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCT 63473 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| | || || || ||||| || || |||||||| || |||||||| | || Sbjct 63474 CAAAGTACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 63533 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| |||||| | | | || |||| | ||| || Sbjct 63534 AATTCCTTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAAC 63593 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | |||||| || ||||||||||| Sbjct 63594 TTCCAAAGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363027810012