Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1402 93.3 6e-14 >seq1402 Length=1917717 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| |||||||||||| ||| ||||||||||||||||||| | ||| | | | | Sbjct 1402340 CCTCAATACTATCATCCGACATTGTAAGTAGAAAACAGCTAGATAATTGAGGTCTGCAGG 1402281 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | || |||||||| | || || |||||||| |||||||| ||| |||| || ||| | Sbjct 1402280 TACCAGCATTAAAAAGCGTTGGCGAAGCGTGTGTAAACCAACGTTCGGACATTAAATTAT 1402221 Query 72479 ACGTCTCAA 72487 | |||| || Sbjct 1402220 ATGTCTGAA 1402212 Score = 86.0 bits (94), Expect = 8e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||||||||||| || |||| || | | | | || || || || || | | Sbjct 1405219 TCCAGGCGTAAAAATGCATGCTGGTTAACTTCGCAAAATTGGGCTCAGCAATATGTACGT 1405160 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | || ||||||||||| ||| | ||||||| || || ||||| | || | || Sbjct 1405159 TAAATGATTGACTTTGATCAATGTAAGCTCCCCGATCAGCTGCCATATCGATCAAGGTTC 1405100 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT 71042 |||| | ||||||||| | |||||||| ||| | |||||||| ||||| | ||| Sbjct 1405099 TTTGAGAAATTTCCCATACGGTTTTATATAACGC-TTTAATATCATCTGGTATGTT 1405045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127337614640