Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1375 170 1e-37 >seq1375 Length=284262 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| |||||||| || || ||||| || |||||||||||||| ||| | | | ||| Sbjct 63202 AAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 63261 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| |||||||||||| | || |||||||| || ||| |||||| ||||||||||| Sbjct 63262 TCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCT 63321 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| || || |||| ||||| || || ||| || ||||||||||| ||| Sbjct 63322 TGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGTT 63381 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | ||| || |||||||||||||| Sbjct 63382 TTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| ||||| |||||||| ||||| || |||||||| | | | ||||| Sbjct 62749 ACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTCC 62808 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | || | |||||| || || ||| || ||||||||||| | Sbjct 62809 AATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGA 62868 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| || ||||| || ||| || ||||||||||||||||| Sbjct 62869 ATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGTTTTT 62928 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||| || ||||| || |||||| Sbjct 62929 CCCGTTAAAGTCTTGACAAATATCTGCATA 62958 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| ||||| |||||||| ||||| || |||||||| | | | |||||| Sbjct 62521 ACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTCT 62580 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | |||| |||||| || || ||| || ||||||||||| | Sbjct 62581 AATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGA 62640 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| || ||| |||| || ||||| || ||| || || |||||||| |||||| Sbjct 62641 ATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTTA 62700 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| ||||| Sbjct 62701 CCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || ||||| || |||||||| ||||| | | | | | |||||||| ||||| ||| Sbjct 63445 GTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCATCTTCTAACTGTTTACCA 63504 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | |||||||||||||| || |||||||||||| || || || ||| || Sbjct 63505 GCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTGGATTTG 63564 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| |||| || |||||||| || || || || ||||||||||| ||||||| |||| Sbjct 63565 ACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAATGGTTTTTCCTGTCAAAGTT 63624 Query 15347 TTTACAAAAATTTGCAT 15363 || || ||||||||||| Sbjct 63625 TTGACGAAAATTTGCAT 63641 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || ||||| |||||||| || ||||||||||||| | | ||||| Sbjct 62974 AATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTCT 63033 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||||||||||||| |||| | || ||||| || ||||| ||||||||||| Sbjct 63034 TCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCT 63093 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || |||| |||||||| || ||| || || || || |||||| Sbjct 63094 TGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGTT 63153 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || | |||||| || ||||| |||||| Sbjct 63154 TTTCCAGTTAAAGTTTTGACGAAAATCTGCATA 63186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172958520574