Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1375 89.7 4e-13 >seq1375 Length=284262 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || || || ||||| ||||||||||| | ||| | |||| Sbjct 62974 AATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTCT 63033 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||||| || || | ||||||| ||| ||||| || | ||| |||||||| Sbjct 63034 TCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCT 63093 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || || || | | | ||||| | || ||| ||| | || |||||| Sbjct 63094 TGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGTT 63153 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||||||||| ||||| ||||| Sbjct 63154 TTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 || |||| || ||||| || ||||||| | |||||||| || | || |||||| Sbjct 62803 TCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTG 62862 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || |||||| ||| || | ||| |||||| | || || ||| | ||||||| Sbjct 62863 TCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATG 62922 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || |||||||| |||||||| || ||||| Sbjct 62923 GTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565655615116