Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1375 107 1e-18 >seq1375 Length=284262 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| ||||| |||||||| | |||||| ||||| || || |||||||| Sbjct 63186 ACCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCT 63245 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | || | || || | || || ||| || |||||||||||||| || | || Sbjct 63246 CAGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGG 63305 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| ||||| |||||| || Sbjct 63306 AATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCAC 63365 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | || |||||||| || || | ||| || || |||||||||||| Sbjct 63366 TTCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATG 63414 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | ||| || |||||||| ||||||||||| || | | | Sbjct 62971 CGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCG 63030 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| ||||| | || || || || | || ||||||||||| Sbjct 63031 TCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTG 63090 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| || || ||| ||| || || | |||| || |||| ||| || Sbjct 63091 TCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATG 63150 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| |||||||| ||||| Sbjct 63151 GTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| || ||||||||||| || || ||||| || |||| | | Sbjct 63427 CGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCA 63486 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || || || || ||| || || |||||||| || || | || || ||||| || Sbjct 63487 TCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTA 63546 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| || || ||| | || | ||| |||| ||| || Sbjct 63547 TCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAATG 63606 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || | |||||| ||||||||||||||| Sbjct 63607 GTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATG 63642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318772106465772